Mercurial > repos > dfornika > mob_suite

comparison mob_hostrange.xml @ 45:4c5276f87370 draft

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"planemo upload for repository https://github.com/phac-nml/mob-suite commit 1904171337e41b9f714838b6f7068aefb089d11d-dirty"
author dfornika
date Thu, 14 Nov 2019 01:40:58 +0000
parents e2b09f608636
children 9513a59a7364
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44:e2b09f608636 45:4c5276f87370
27 --inputseq '${inputseq}' 27 --inputseq '${inputseq}'
28 --outdir '.' 28 --outdir '.'
29 ]]> 29 ]]>
30 </command> 30 </command>
31 <inputs> 31 <inputs>
32 <param name="inputseq" type="data" format="fasta" label="Input" help="plasmid FASTA file"/> 32 <param name="inputseq" type="data" format="fasta" optional="true" label="Input" help="plasmid FASTA file"/>
33 <param name="exact_match" type="boolean" truevalue="--exact_match" falsevalue="" checked="false"/> 33 <param name="exact_match" type="boolean" truevalue="--exact_match" falsevalue="" checked="false"/>
34 <param name="loose_match" type="boolean" truevalue="--loose_match" falsevalue="" checked="false"/> 34 <param name="loose_match" type="boolean" truevalue="--loose_match" falsevalue="" checked="false"/>
35 <param name="host_range_detailed" type="boolean" truevalue="--host_range_detailed" falsevalue="" checked="false"/> 35 <param name="host_range_detailed" type="boolean" truevalue="--host_range_detailed" falsevalue="" checked="false"/>
36 <param name="replicon_name" type="text" /> 36 <param name="replicon_name" type="text" optional="true"/>
37 <param name="relaxase_name" type="text" /> 37 <param name="relaxase_name" type="text" optional="true"/>
38 <param name="relaxase_accession" type="text" /> 38 <param name="relaxase_accession" type="text" optional="true"/>
39 <param name="cluster_id" type="text" /> 39 <param name="cluster_id" type="text" optional="true"/>
40 </inputs> 40 </inputs>
41 <outputs> 41 <outputs>
42 <data name="hostrange_phylostats" label="${tool.name}: Phylostats report on ${input.name}" format="tabular"> 42 <data name="hostrange_phylostats" label="${tool.name}: Phylostats report on ${input.name}" format="tabular">
43 <discover_datasets pattern=".+hostrange_phylostats\.txt" visible="true" format="tabular" /> 43 <discover_datasets pattern=".+hostrange_phylostats\.txt" visible="true" format="tabular" />
44 </data> 44 </data>