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comparison mob_hostrange.xml @ 43:21ccebc96bd9 draft

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"planemo upload for repository https://github.com/phac-nml/mob-suite commit d5db17429118cd74a85986c49b917caec6f952bd-dirty"
author dfornika
date Thu, 14 Nov 2019 01:19:58 +0000
parents cd69d25ce451
children e2b09f608636
comparison
equal deleted inserted replaced
42:bcf6aa9dbc77 43:21ccebc96bd9
10 <![CDATA[ 10 <![CDATA[
11 mob_hostrange 11 mob_hostrange
12 ${exact_match} 12 ${exact_match}
13 ${loose_match} 13 ${loose_match}
14 ${host_range_detailed} 14 ${host_range_detailed}
15 #if str(${replicon_name}) != "" 15 #if str(${replicon_name}) != "":
16 --replicon_name '${replicon_name}' 16 --replicon_name '${replicon_name}'
17 #end if 17 #end if
18 #if str(${relaxase_name}) != "" 18 #if str(${relaxase_name}) != "":
19 --relaxase_name '${relaxase_name}' 19 --relaxase_name '${relaxase_name}'
20 #end if 20 #end if
21 #if str(${relaxase_accession}) != "" 21 #if str(${relaxase_accession}) != "":
22 --relaxase_accession '${relaxase_accession}' 22 --relaxase_accession '${relaxase_accession}'
23 #end if 23 #end if
24 #if str(${cluster_id}) != "" 24 #if str(${cluster_id}) != "":
25 --cluster_id '${cluster_id}' 25 --cluster_id '${cluster_id}'
26 #end if 26 #end if
27 --inputseq "${inputseq}" 27 --inputseq "${inputseq}"
28 --outdir '.'; 28 --outdir '.'
29 ]]> 29 ]]>
30 </command> 30 </command>
31 <inputs> 31 <inputs>
32 <param name="inputseq" type="data" format="fasta" label="Input" help="plasmid FASTA file"/> 32 <param name="inputseq" type="data" format="fasta" label="Input" help="plasmid FASTA file"/>
33 <param name="exact_match" type="boolean" truevalue="--exact_match" falsevalue="" checked="false"/> 33 <param name="exact_match" type="boolean" truevalue="--exact_match" falsevalue="" checked="false"/>