Mercurial > repos > dfornika > mob_recon

changeset 3:84cf5ed52f58 draft default tip

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"planemo upload for repository https://github.com/phac-nml/mob-suite commit dcdac86bce5c44043516fbd472ab7c19d7bf4d50-dirty"
author dfornika
date Tue, 05 Nov 2019 17:17:47 -0500
parents 98a686bf8d1c
children
files mob_recon.xml
diffstat 1 files changed, 4 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/mob_recon.xml	Tue Nov 05 17:09:40 2019 -0500
+++ b/mob_recon.xml	Tue Nov 05 17:17:47 2019 -0500
@@ -70,8 +70,10 @@
   <outputs>
     <data name="contig_report" format="tabular" from_work_dir="contig_report.txt" label="${tool.name} on ${on_string}: Overall contig MOB-recon report"/> 
     <data name="repetitive_blast_report" format="tabular" from_work_dir="repetitive_blast_report.txt" label="${tool.name} on ${on_string}: Repetitive elements BLAST report"/>
-    <data name="chromosome" type="data" format="fasta" from_work_dir="chromosome.fasta" label="${tool.name} on ${on_string}: chromosome"/>
-    <data name="plasmids" type="data" format="fasta" from_work_dir="plasmids" label="${tool.name} on ${on_string}: plasmids"/>
+    <data name="chromosome" type="data" format="fasta" from_work_dir="chromosome.fasta" label="${tool.name} on ${on_string}: Chromosome"/>
+    <collection name="plasmids" type="list" label="${tool.name} on ${on_string}: Plasmids">
+        <discover_datasets pattern="__name_and_ext__" directory="plasmids" />
+    </collection>
   </outputs>
   <tests>
     <test>