Mercurial > repos > dfornika > micall_lite

changeset 7:b8b7c5ddd2cd draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit c8241b460c9def5b434fa4350924599b09b17a69-dirty
author dfornika
date Fri, 20 Sep 2019 18:01:43 -0400
parents de600d706328
children 0b01b2ebd33a
files micall-lite.xml
diffstat 1 files changed, 1 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/micall-lite.xml	Fri Sep 20 17:58:54 2019 -0400
+++ b/micall-lite.xml	Fri Sep 20 18:01:43 2019 -0400
@@ -11,6 +11,7 @@
         <![CDATA[
           ln -s '${input_pair.forward}' '${input_pair.element_identifier}_R1.fastq.gz' &&
           ln -s '${input_pair.reverse}' '${input_pair.element_identifier}_R2.fastq.gz' &&
+          mkdir 'outdir' &&
           micall
             '${input_pair.element_identifier}_R1.fastq.gz'
             '${input_pair.element_identifier}_R2.fastq.gz'