Mercurial > repos > dfornika > micall_lite

comparison amino2consensus.py @ 19:8e6d3de9c7fa draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit 822e7e1c2de31a72c2a13bcc15b9df06b699561f-dirty
author dfornika
date Wed, 25 Sep 2019 18:31:49 -0400
parents 43a987c03ec5
children b1e1f49ebe14
comparison
equal deleted inserted replaced
18:43a987c03ec5 19:8e6d3de9c7fa
27 return region 27 return region
28 28
29 def main(args): 29 def main(args):
30 current_region = determine_first_region(args.amino) 30 current_region = determine_first_region(args.amino)
31 seq = [] 31 seq = []
32 with open(args.amino, newline='') as f: 32 with open(args.amino) as f:
33 reader = csv.DictReader(f) 33 reader = csv.DictReader(f)
34 for row in reader: 34 for row in reader:
35 if row['region'] == current_region: 35 if row['region'] == current_region:
36 amino_counts = {} 36 amino_counts = {}
37 for amino_acid in AMINO_ACIDS: 37 for amino_acid in AMINO_ACIDS: