Mercurial > repos > dfornika > mentalist
changeset 38:fd7788ac4f4a draft
planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 79b9f36868b2aaf72661abd09b96a3ad582b8918-dirty
| author | dfornika |
|---|---|
| date | Sat, 24 Mar 2018 20:26:49 -0400 |
| parents | c7ae5215f11d |
| children | 3ffa209e1668 |
| files | tools/mentalist_call/mentalist_call.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/tools/mentalist_call/mentalist_call.xml Sat Mar 24 19:23:20 2018 -0400 +++ b/tools/mentalist_call/mentalist_call.xml Sat Mar 24 20:26:49 2018 -0400 @@ -15,9 +15,9 @@ $output_votes $output_special #if $input_type.sPaired == "paired": - -s $input_type.pInput1.name $input_type.pInput1 $input_type.pInput2 + -s $input_type.pInput1.name -1 $input_type.pInput1 -2 $input_type.pInput2 #elif $input_type.sPaired == "collections": - -s $input_type.fastq_collection.name $input_type.fastq_collection.forward $input_type.fastq_collection.reverse + -s $input_type.fastq_collection.name -1 $input_type.fastq_collection.forward -2 $input_type.fastq_collection.reverse #end if ]]></command> <inputs> @@ -45,7 +45,7 @@ <param name="kmer_threshold" type="integer" label="Kmer threshold" help="Minimum number of times a kmer is seen to be considered present in the sample." value="10" min="1" max="25" /> - <parapm name="output_votes" type="boolean" label="Output votes" + <param name="output_votes" type="boolean" label="Output votes" argument="--output_votes" truevalue="--output_votes" falsevalue="" help="Outputs the results for the original voting algorithm" /> <param name="output_special" type="boolean" label="Output special"