# HG changeset patch
# User dfornika
# Date 1523468326 14400
# Node ID ec9bc05b331bee916c1ca54db81965adbaa7e6fd
# Parent  f7c4ccfa3ba90d91c6641984aa69fae6507b1b7c
planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit f161d96d4d4dcd11a53eeda99595d5fd22891612-dirty

diff -r f7c4ccfa3ba9 -r ec9bc05b331b data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.xml
--- a/data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.xml	Tue Apr 10 17:38:45 2018 -0400
+++ b/data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.xml	Wed Apr 11 13:38:46 2018 -0400
@@ -16,15 +16,15 @@
 	   label="Kmer size" help="Kmer size"
 	   value="31" min="1" max="32" />
     <param name="scheme" type="select" multiple="false" label="Select scheme to download">
-      <option value="3956907">Acinetobacter baumannii</option>
-      <option value="3560802">Clostridioides difficile</option>
-      <option value="991893">Enterococcus faecium</option>
-      <option value="260204">Francisella tularensis</option>
-      <option value="2187931">Klebsiella pneumoniae/variicola/quasipneumoniae</option>
-      <option value="1025099">Legionella pneumophila</option>
-      <option value="690488">Listeria monocytogenes</option>
-      <option value="741110">Mycobacterium tuberculosis/bovis/africanum/canettii</option>
-      <option value="141106">Staphylococcus aureus</option>
+      <option value="Acinetobacter baumannii">Acinetobacter baumannii</option>
+      <option value="Clostridioides difficile">Clostridioides difficile</option>
+      <option value="Enterococcus faecium">Enterococcus faecium</option>
+      <option value="Francisella tularensis">Francisella tularensis</option>
+      <option value="Klebsiella pneumoniae/variicola/quasipneumoniae">Klebsiella pneumoniae/variicola/quasipneumoniae</option>
+      <option value="Legionella pneumophila">Legionella pneumophila</option>
+      <option value="Listeria monocytogenes">Listeria monocytogenes</option>
+      <option value="Mycobacterium tuberculosis/bovis/africanum/canettii">Mycobacterium tuberculosis/bovis/africanum/canettii</option>
+      <option value="Staphylococcus aureus">Staphylococcus aureus</option>
     </param>
   </inputs>
   <outputs>
diff -r f7c4ccfa3ba9 -r ec9bc05b331b data_managers/data_manager_mentalist_download_enterobase/data_manager/mentalist_download_enterobase.xml
--- a/data_managers/data_manager_mentalist_download_enterobase/data_manager/mentalist_download_enterobase.xml	Tue Apr 10 17:38:45 2018 -0400
+++ b/data_managers/data_manager_mentalist_download_enterobase/data_manager/mentalist_download_enterobase.xml	Wed Apr 11 13:38:46 2018 -0400
@@ -30,6 +30,6 @@
     <data name="out_file" format="data_manager_json" />
   </outputs>
   <citations>
-    <citation type="doi">10.1101/172858</citation>
+    <citation type="doi">10.1099/mgen.0.000146</citation>
   </citations>
 </tool>
diff -r f7c4ccfa3ba9 -r ec9bc05b331b data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.xml
--- a/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.xml	Tue Apr 10 17:38:45 2018 -0400
+++ b/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.xml	Wed Apr 11 13:38:46 2018 -0400
@@ -154,6 +154,6 @@
     <data name="out_file" format="data_manager_json" />
   </outputs>
   <citations>
-    <citation type="doi">10.1101/172858</citation>
+    <citation type="doi">10.1099/mgen.0.000146</citation>
   </citations>
 </tool>