Mercurial > repos > dfornika > mentalist

comparison tools/mentalist_call/mentalist_call.xml @ 18:c3cef07b5132 draft

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planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 7e8b159e34b91cb5e76ba86feaea24158565606b-dirty
author dfornika
date Wed, 11 Oct 2017 17:49:06 -0400
parents 0f74aa0cfb68
children 9a90295d0dfb
comparison
equal deleted inserted replaced
17:907a3c5890a4 18:c3cef07b5132
5 <command detect_errors="exit_code"><![CDATA[ 5 <command detect_errors="exit_code"><![CDATA[
6 mentalist 6 mentalist
7 call 7 call
8 -o '$output_file' 8 -o '$output_file'
9 -s '$sample_name' 9 -s '$sample_name'
10 --db '$kmer_db.fields.path' 10 --db '$kmer_db.fields.path'/'$kmer_db.fields.value'
11 #if $discard_threshold 11 #if $discard_threshold
12 -t '$discard_threshold' 12 -t '$discard_threshold'
13 #end if 13 #end if
14 $input_fastqs.forward $input_fastqs.reverse 14 $input_fastqs.forward $input_fastqs.reverse
15 ]]></command> 15 ]]></command>