Mercurial > repos > dfornika > mentalist
comparison tools/mentalist_tree/mentalist_tree.xml @ 58:97c29398c1c5 draft
planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
| author | dfornika |
|---|---|
| date | Wed, 06 Jun 2018 13:27:36 -0400 |
| parents | |
| children | d36f7f883a30 |
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| 57:1f765046e008 | 58:97c29398c1c5 |
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| 1 <tool id="mentalist_tree" name="MentaLiST Tree" version="0.1-SNAPSHOT"> | |
| 2 <requirements> | |
| 3 <requirement type="package" version="3.4.1">r-base</requirement> | |
| 4 <requirement type="package" version="2.2.0">r-phangorn</requirement> | |
| 5 </requirements> | |
| 6 <command detect_errors="exit_code"><![CDATA[ | |
| 7 $__tool_directory__/mentalist_tree | |
| 8 '${input}' | |
| 9 > '${output}' | |
| 10 ]]></command> | |
| 11 <inputs> | |
| 12 <param name="input" type="data" format="tabular" label="MentaLiST Distance Matrix" help=""/> | |
| 13 </inputs> | |
| 14 <outputs> | |
| 15 <data name="output" format="newick"/> | |
| 16 </outputs> | |
| 17 <tests> | |
| 18 <test> | |
| 19 <param name="input" value="mentalist_tree/small_input_00.tsv" /> | |
| 20 <output name="output" file="mentalist_tree/small_output_00.nwk" /> | |
| 21 </test> | |
| 22 <test> | |
| 23 <param name="input" value="mentalist_tree/med_input_00.tsv" /> | |
| 24 <output name="output" file="mentalits_tree/med_output_00.nwk" /> | |
| 25 </test> | |
| 26 <test> | |
| 27 <param name="input" value="mentalist_tree/large_input_00.tsv" /> | |
| 28 <output name="output" file="mentalist_tree/large_output_00.nwk" /> | |
| 29 </test> | |
| 30 </tests> | |
| 31 <help><![CDATA[ | |
| 32 mentalist_distance <input.tsv> | |
| 33 ]]></help> | |
| 34 <citations> | |
| 35 </citations> | |
| 36 </tool> |