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annotate tools/mentalist_tree/mentalist_tree.xml @ 69:ab43979cf8f0 draft

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planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit d6aa0144475c93626400a46e933acbbd77fefb01-dirty
author dfornika
date Fri, 15 Jun 2018 17:47:38 -0400
parents 03c37b300f43
children 000d34289a39
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03c37b300f43 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit d6aa0144475c93626400a46e933acbbd77fefb01-dirty
dfornika
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1 <tool id="mentalist_tree" name="MentaLiST Tree" version="0.1.9">
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2 <requirements>
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3 <requirement type="package" version="1.71">biopython</requirement>
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4 </requirements>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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5 <command detect_errors="exit_code"><![CDATA[
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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6 $__tool_directory__/mentalist_tree
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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7 '${input}'
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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8 > '${output}'
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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9 ]]></command>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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10 <inputs>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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11 <param name="input" type="data" format="tabular" label="MentaLiST Distance Matrix" help=""/>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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12 </inputs>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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13 <outputs>
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14 <data name="output" format="txt"/>
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97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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15 </outputs>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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16 <tests>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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17 <test>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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18 <param name="input" value="mentalist_tree/small_input_00.tsv" />
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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19 <output name="output" file="mentalist_tree/small_output_00.nwk" />
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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20 </test>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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21 <test>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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22 <param name="input" value="mentalist_tree/med_input_00.tsv" />
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03c37b300f43 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit d6aa0144475c93626400a46e933acbbd77fefb01-dirty
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23 <output name="output" file="mentalitst_tree/med_output_00.nwk" />
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97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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24 </test>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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25 </tests>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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26 <help><![CDATA[
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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27 mentalist_distance <input.tsv>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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28 ]]></help>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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29 <citations>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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30 </citations>
97c29398c1c5 planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 141a199133b54e86a7501d6dfc68e9d77c7150ea
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31 </tool>