Mercurial > repos > dfornika > mash_sketch

changeset 4:f310f4fb5985 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 2ac08a8b2c90fc4627c1fc0e6bd4ef73be529e94-dirty"
author dfornika
date Fri, 14 Feb 2020 20:30:04 +0000
parents c51012334207
children 0245c1501e02
files mash_sketch.xml
diffstat 1 files changed, 0 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/mash_sketch.xml	Fri Feb 14 20:10:35 2020 +0000
+++ b/mash_sketch.xml	Fri Feb 14 20:30:04 2020 +0000
@@ -14,9 +14,7 @@
             -s '${sketch_size}'
             -k '${kmer_size}'
             #if str ( $reads_assembly.reads_assembly_selector ) == "reads"
-              -b '${bloom_filter_size}'
               -m '${minimum_kmer_copies}'
-              -c '${target_coverage}'
               -r
               #if str( $reads_assembly.reads_input.reads_input_selector ) == "paired"
                 '$reads_input.reads_1' '$reads_input.reads_2'
@@ -58,7 +56,6 @@
                     </when>
                 </conditional>
                 <param type="integer" name="minimum_kmer_copies" argument="-m" value="1" min="1" max="1000" label="Minimum copies of each k-mer required to pass noise filter"/>
-                <param type="float" name="target_coverage" argument="-c" value="1." min="0." max="100." label="Target coverage"/>
             </when>
             <when value="assembly">
                 <param name="assembly" type="data" format="fasta,fasta.gz" label="Assembly"/>