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changeset 2:82ccc25387ea draft

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planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/kraken2 commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
author dfornika
date Mon, 04 Mar 2019 14:03:53 -0500
parents 93157a449e33
children 396aa10b1273
files kraken2.xml
diffstat 1 files changed, 0 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/kraken2.xml	Mon Mar 04 14:00:46 2019 -0500
+++ b/kraken2.xml	Mon Mar 04 14:03:53 2019 -0500
@@ -9,12 +9,9 @@
     <version_command>kraken2 --version</version_command>
     <command detect_errors="exit_code">
         <![CDATA[
-        @SET_DATABASE_PATH@ &&
-
         kraken2
             --threads \${GALAXY_SLOTS:-1}
             @INPUT_DATABASE@
-
             #if $single_paired.single_paired_selector == 'yes'
                 #if $forward_input.is_of_type( 'fastq' ):
                     --fastq-input
@@ -63,7 +60,6 @@
                 <param format="fasta,fastq" label="Input sequences" name="input_sequences" type="data" help="FASTA or FASTQ datasets"/>
             </when>
         </conditional>
-        <param name="" type="" format="" />
     </inputs>
     <outputs>
         <data name="output" format="" />