Mercurial > repos > dfornika > kma

changeset 1:0cea5eb0fa0e draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/kma/ commit e5a95750f732cec753a8c2d8dbca0f63e50205f8-dirty
author dfornika
date Fri, 04 Oct 2019 15:13:01 -0400
parents abcd73320f34
children 1c1dba36c061
files kma_map.xml
diffstat 1 files changed, 6 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/kma_map.xml	Thu Oct 03 01:10:37 2019 -0400
+++ b/kma_map.xml	Fri Oct 04 15:13:01 2019 -0400
@@ -19,7 +19,8 @@
             #else:
                 -i '${single_paired.input_sequences}'
             #end if
-            -o output
+            -o output &&
+	 gunzip output.frag.gz
 	]]>
     </command>
     <inputs>
@@ -47,8 +48,10 @@
         </param>
     </inputs>
     <outputs>
-      <data name="res" label="result overview" format="tabular" from_work_dir="output.res" />
-      <data name="aln" label="consensus alignment" format="aln" from_work_dir="output.aln" />
+      <data name="result_overview" label="Result overview" format="tabular" from_work_dir="output.res" />
+      <data name="consensus_alignment" label="Consensus alignment" format="text" from_work_dir="output.aln" />
+      <data name="consensus_sequences" label="Consensus sequences" format="fasta" from_work_dir="output.aln" />
+      <data name="read_mapping" label="Read mapping info" format="tabular" from_work_dir="output.frag" />
     </outputs>
     <tests>
     </tests>