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"planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/ivar_variants_to_vcf commit 16332019b4aab6af58c74e631f390dfeef23a3dc"
author dfornika
date Fri, 05 Jun 2020 05:10:05 +0000
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<tool id="ivar_variants_to_vcf" name="iVar Variants to VCF" version="0.1.0">
    <description>Convert iVar tabular variant output to .vcf format</description>
    <requirements />
    <command detect_errors="exit_code"><![CDATA[
        '$__tool_directory__/ivar_variants_to_vcf.py'
        -ma '${min_allele_freq}'
        ${input}
        ${output}
    ]]></command>
    <inputs>
        <param name="input" type="data" format="tabular" />
        <param name="min_allele_freq" type="float" min="0.0" value="0.0" max="1.0" />
    </inputs>
    <outputs>
        <data name="output" label="Variants (VCF)" format="vcf" />
    </outputs>
    <tests>
        <test>
            <param name="input" value="SAMEA6808195-variants.tsv" />
            <param name="min_allele_freq" value="0.5" />
            <output name="output" file="SAMEA6808195-variants.vcf" lines_diff="2"/>
        </test>
    </tests>
    <help><![CDATA[
    ]]></help>
    <citations>
        <citation type="doi">10.5281/zenodo.3872730</citation>
    </citations>
</tool>