Mercurial > repos > dfornika > data_manager_build_kraken2_database

view test.json @ 78:ed1d3216d5d4 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit bded7bac774cdcf890076c055f72a48710ce638b-dirty"
author dfornika
date Fri, 05 Nov 2021 22:05:54 +0000
parents 7bda019d3d0c
children
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{
    "param_dict": {
        "chromInfo": "/galaxy-central/tool-data/shared/ucsc/chrom/?.len",
        "input": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX",
        "__datatypes_config__": "/export/galaxy-central/database/job_working_directory/000/24/registry.xml",
        "GALAXY_DATATYPES_CONF_FILE": "/export/galaxy-central/database/job_working_directory/000/24/registry.xml",
        "__history_id__": "f597429621d6eb2b",
        "__galaxy_url__": "http://localhost",
        "database_type": {
            "database_type": "standard_prebuilt",
            "__current_case__": "1",
            "standard_prebuilt_size": "8",
            "prebuilt_date": "2021-05-27"
        },
        "dbkey": "?",
        "__input_ext": "input",
        "__user__": "galaxy.model:SafeStringWrapper(galaxy.model.User:<class 'NoneType'>,<class 'NotImplementedType'>,<class 'bool'>,<class 'bytearray'>,<class 'ellipsis'>,<class 'galaxy.tools.wrappers.ToolParameterValueWrapper'>,<class 'galaxy.util.object_wrapper.SafeStringWrapper'>,<class 'numbers.Number'>)",
        "__user_id__": "1",
        "userId": "1",
        "__user_email__": "admin@galaxy.org",
        "userEmail": "admin@galaxy.org",
        "__user_name__": "admin",
        "out_file": "/export/galaxy-central/database/files/000/dataset_26.dat",
        "__tool_directory__": "/galaxy-central/database/shed_tools/testtoolshed.g2.bx.psu.edu/repos/dfornika/data_manager_build_kraken2_database/80e778af6c6c/data_manager_build_kraken2_database/data_manager",
        "__get_data_table_entry__": "<function ToolEvaluator.__populate_non_job_params.<locals>.get_data_table_entry at 0x7f1950018048>",
        "__local_working_directory__": "/export/galaxy-central/database/job_working_directory/000/24",
        "__app__": "galaxy.app:UniverseApplication",
        "__new_file_path__": "/export/galaxy-central/database/files",
        "__tool_data_path__": "/galaxy-central/tool-data",
        "GALAXY_DATA_INDEX_DIR": "/galaxy-central/tool-data",
        "__root_dir__": "/galaxy-central",
        "GALAXY_ROOT_DIR": "/galaxy-central",
        "__admin_users__": "admin@galaxy.org"
    },
    "output_data": [
        {
            "out_data_name": "out_file",
            "ext": "data_manager_json",
            "dataset_id": 26,
            "hda_id": 28,
            "file_name": "/export/galaxy-central/database/files/000/dataset_26.dat",
            "extra_files_path": "/export/galaxy-central/database/job_working_directory/000/24/working/dataset_26_files"
        }
    ],
    "job_config": {
        "GALAXY_DATATYPES_CONF_FILE": "/export/galaxy-central/database/job_working_directory/000/24/registry.xml",
        "GALAXY_ROOT_DIR": "/galaxy-central",
        "TOOL_PROVIDED_JOB_METADATA_FILE": "galaxy.json"
    }
}