Mercurial > repos > dfornika > data_manager_build_kraken2_database

diff test.json @ 73:7bda019d3d0c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit cec255ceca4b1dd39c4b5795cbfcf5f8e74fc9c7-dirty"
author dfornika
date Fri, 05 Nov 2021 19:34:04 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test.json	Fri Nov 05 19:34:04 2021 +0000
@@ -0,0 +1,50 @@
+{
+    "param_dict": {
+        "chromInfo": "/galaxy-central/tool-data/shared/ucsc/chrom/?.len",
+        "input": "XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX",
+        "__datatypes_config__": "/export/galaxy-central/database/job_working_directory/000/24/registry.xml",
+        "GALAXY_DATATYPES_CONF_FILE": "/export/galaxy-central/database/job_working_directory/000/24/registry.xml",
+        "__history_id__": "f597429621d6eb2b",
+        "__galaxy_url__": "http://localhost",
+        "database_type": {
+            "database_type": "standard_prebuilt",
+            "__current_case__": "1",
+            "standard_prebuilt_size": "8",
+            "prebuilt_date": "2021-05-27"
+        },
+        "dbkey": "?",
+        "__input_ext": "input",
+        "__user__": "galaxy.model:SafeStringWrapper(galaxy.model.User:<class 'NoneType'>,<class 'NotImplementedType'>,<class 'bool'>,<class 'bytearray'>,<class 'ellipsis'>,<class 'galaxy.tools.wrappers.ToolParameterValueWrapper'>,<class 'galaxy.util.object_wrapper.SafeStringWrapper'>,<class 'numbers.Number'>)",
+        "__user_id__": "1",
+        "userId": "1",
+        "__user_email__": "admin@galaxy.org",
+        "userEmail": "admin@galaxy.org",
+        "__user_name__": "admin",
+        "out_file": "/export/galaxy-central/database/files/000/dataset_26.dat",
+        "__tool_directory__": "/galaxy-central/database/shed_tools/testtoolshed.g2.bx.psu.edu/repos/dfornika/data_manager_build_kraken2_database/80e778af6c6c/data_manager_build_kraken2_database/data_manager",
+        "__get_data_table_entry__": "<function ToolEvaluator.__populate_non_job_params.<locals>.get_data_table_entry at 0x7f1950018048>",
+        "__local_working_directory__": "/export/galaxy-central/database/job_working_directory/000/24",
+        "__app__": "galaxy.app:UniverseApplication",
+        "__new_file_path__": "/export/galaxy-central/database/files",
+        "__tool_data_path__": "/galaxy-central/tool-data",
+        "GALAXY_DATA_INDEX_DIR": "/galaxy-central/tool-data",
+        "__root_dir__": "/galaxy-central",
+        "GALAXY_ROOT_DIR": "/galaxy-central",
+        "__admin_users__": "admin@galaxy.org"
+    },
+    "output_data": [
+        {
+            "out_data_name": "out_file",
+            "ext": "data_manager_json",
+            "dataset_id": 26,
+            "hda_id": 28,
+            "file_name": "/export/galaxy-central/database/files/000/dataset_26.dat",
+            "extra_files_path": "/export/galaxy-central/database/job_working_directory/000/24/working/dataset_26_files"
+        }
+    ],
+    "job_config": {
+        "GALAXY_DATATYPES_CONF_FILE": "/export/galaxy-central/database/job_working_directory/000/24/registry.xml",
+        "GALAXY_ROOT_DIR": "/galaxy-central",
+        "TOOL_PROVIDED_JOB_METADATA_FILE": "galaxy.json"
+    }
+}