Mercurial > repos > dfornika > data_manager_build_kraken2_database

comparison data_manager_conf.xml @ 21:fd3fd1cae8dd draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 70494d589aa1990618ebc7a895e91477d41c3203-dirty
author dfornika
date Mon, 04 Mar 2019 21:08:15 -0500
parents d04d198e185a
children 7233538ef3cb
comparison
equal deleted inserted replaced
20:754b30637d7c 21:fd3fd1cae8dd
1 <data_managers> 1 <data_managers>
2 <data_manager tool_file="data_manager/kraken2_custom_database_builder.xml" id="kraken2_custom_database_builder" version="1.0">
3 <data_table name="kraken2_databases">
4 <output>
5 <column name="value"/>
6 <column name="name"/>
7 <column name="path" output_ref="out_file">
8 <move type="directory" relativize_symlinks="True">
9 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target>
10 </move>
11 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation>
12 <value_translation type="function">abspath</value_translation>
13 </column>
14 </output>
15 </data_table>
16 </data_manager>
17 <data_manager tool_file="data_manager/kraken2_standard_database_builder.xml" id="kraken2_standard_database_builder" version="1.0">
18 <data_table name="kraken2_databases">
19 <output>
20 <column name="value"/>
21 <column name="name"/>
22 <column name="path" output_ref="out_file">
23 <move type="directory" relativize_symlinks="True">
24 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target>
25 </move>
26 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation>
27 <value_translation type="function">abspath</value_translation>
28 </column>
29 </output>
30 </data_table>
31 </data_manager>
32 <data_manager tool_file="data_manager/kraken2_build_standard.xml" id="kraken2_build_standard" version="1.0"> 2 <data_manager tool_file="data_manager/kraken2_build_standard.xml" id="kraken2_build_standard" version="1.0">
33 <data_table name="kraken2_databases"> 3 <data_table name="kraken2_databases">
34 <output> 4 <output>
35 <column name="value"/> 5 <column name="value"/>
36 <column name="name"/> 6 <column name="name"/>
37 <column name="path" output_ref="out_file"> 7 <column name="path" output_ref="out_file">
38 <move type="directory" relativize_symlinks="True"> 8 <move type="directory">
39 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target> 9 <source>${path}</source>
10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
40 </move> 11 </move>
41 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation> 12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
42 <value_translation type="function">abspath</value_translation> 13 <value_translation type="function">abspath</value_translation>
43 </column> 14 </column>
44 </output> 15 </output>
45 </data_table> 16 </data_table>
46 </data_manager> 17 </data_manager>
48 <data_table name="kraken2_databases"> 19 <data_table name="kraken2_databases">
49 <output> 20 <output>
50 <column name="value"/> 21 <column name="value"/>
51 <column name="name"/> 22 <column name="name"/>
52 <column name="path" output_ref="out_file"> 23 <column name="path" output_ref="out_file">
53 <move type="directory" relativize_symlinks="True"> 24 <move type="directory">
54 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target> 25 <source>${path}</source>
26 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
55 </move> 27 </move>
56 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation> 28 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
29 <value_translation type="function">abspath</value_translation>
30 </column>
31 </output>
32 </data_table>
33 </data_manager>
34 <data_manager tool_file="data_manager/kraken2_build_special.xml" id="kraken2_build_special" version="1.0">
35 <data_table name="kraken2_databases">
36 <output>
37 <column name="value"/>
38 <column name="name"/>
39 <column name="path" output_ref="out_file">
40 <move type="directory">
41 <source>${path}</source>
42 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
43 </move>
44 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
57 <value_translation type="function">abspath</value_translation> 45 <value_translation type="function">abspath</value_translation>
58 </column> 46 </column>
59 </output> 47 </output>
60 </data_table> 48 </data_table>
61 </data_manager> 49 </data_manager>