Mercurial > repos > dfornika > data_manager_build_bracken_database

comparison data_manager_conf.xml @ 1:5a1116c3e2c8 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_bracken_database/ commit 423cf96266f6ac433052ff72edb1397502313010-dirty
author dfornika
date Fri, 26 Jul 2019 16:54:43 -0400
parents a391d55f928a
children b9a0e4d0d310
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0:a391d55f928a 1:5a1116c3e2c8
1 <data_managers> 1 <data_managers>
2 <data_manager tool_file="data_manager/mash_build_sketch.xml" id="mash_build_sketch" version="2.1+galaxy0"> 2 <data_manager tool_file="data_manager/bracken_build_database.xml" id="bracken_build_database" version="2.2+galaxy0">
3 <data_table name="mash_sketches"> 3 <data_table name="bracken_databases">
4 <output> 4 <output>
5 <column name="value"/> 5 <column name="value"/>
6 <column name="name"/> 6 <column name="name"/>
7 <column name="path" output_ref="out_file"> 7 <column name="path" output_ref="out_file">
8 <move type="file"> 8 <move type="file">
9 <source>#import os#${os.path.dirname($path)}</source> 9 <source>#import os#${os.path.dirname($path)}</source>
10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mash_sketches/#import os#${os.path.dirname($path)}</target> 10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">bracken_databases/#import os#${os.path.dirname($path)}</target>
11 </move> 11 </move>
12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mash_sketches/${path}</value_translation> 12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/bracken_databases/${path}</value_translation>
13 <value_translation type="function">abspath</value_translation> 13 <value_translation type="function">abspath</value_translation>
14 </column> 14 </column>
15 </output> 15 </output>
16 </data_table> 16 </data_table>
17 </data_manager> 17 </data_manager>