Mercurial > repos > dfornika > chewbbaca_createschema

changeset 12:64a7d9e95445 draft

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Uploaded
author dfornika
date Fri, 21 Feb 2020 01:55:12 +0000
parents c9bcb49cd0e2
children 35ee71a46436
files chewbbaca_createschema.xml
diffstat 1 files changed, 5 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/chewbbaca_createschema.xml	Fri Feb 21 01:48:11 2020 +0000
+++ b/chewbbaca_createschema.xml	Fri Feb 21 01:55:12 2020 +0000
@@ -4,12 +4,13 @@
         <requirement type="package" version="2.1.0">chewbbaca</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
+        mkdir assemblies &&
+        #for $assembly in $assemblies:
+          ln -s $assembly assemblies &&
+        #end for
         chewBBACA.py CreateSchema
           --cpu \${GALAXY_SLOTS:-1}
-          -i 
-          #for $assembly in $assemblies:
-            $assembly
-          #end for
+          -i assemblies
           #if str( $prodigal_training_file_source.prodigal_training_file_source_selector ) == 'tool_data_table':
             --ptf '${prodigal_training_file_source.prodigal_training_file.fields.path}'
           #elif str( $prodigal_training_file_source.prodigal_training_file_source_selector ) == 'history':