--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cgview_xml_builder.xml	Thu Dec 12 19:32:56 2019 +0000
@@ -0,0 +1,56 @@
+<tool id="cgview_xml_builder" name="cgview XML builder" version="1.0+galaxy0">
+    <description>Circular Genome Viewer</description>
+    <requirements>
+        <requirement type="package" version="1.0">cgview</requirement>
+    </requirements>   
+    <command detect_errors="exit_code">
+        <![CDATA[
+          cgview_xml_builder.pl
+           -gc_content $gc_content
+           -gc_skew $gc_skew
+           -at_content $at_content
+           -at_skew $at_skew
+           -average $average
+           -feature_labels $feature_labels
+           -use_opacity $use_opacity
+           -show_sequence_features $show_sequence_features
+           -sequence '${reference}'
+           -blast '${blast_output}'
+           -output '${output}'
+        ]]>  
+    </command>
+    <inputs>
+        <param name="reference" type="data" format="genbank,fasta" label="Reference" help=""/>
+        <param name="gc_content" type="boolean" truevalue="T" falsevalue="F" label="Display GC Content" checked="true" help=""/>
+	<param name="gc_skew" type="boolean" truevalue="T" falsevalue="F" label="Display GC Skew" checked="false" help=""/>
+	<param name="at_content" type="boolean" truevalue="T" falsevalue="F" label="Display AT Content" checked="false" help=""/>
+	<param name="at_skew" type="boolean" truevalue="T" falsevalue="F" label="Display AT Skew" checked="false" help=""/>
+	<param name="average" type="boolean" truevalue="T" falsevalue="F" label="Display deviation of GC and AT values from the average for the entire genome." checked="true" help=""/>
+	<param name="feature_labels" type="boolean" truevalue="T" falsevalue="F" label="Display feature labels from GenBank file" checked="false" help=""/>
+	<param name="use_opacity" type="boolean" truevalue="T" falsevalue="F" label="Draw BLAST hits with partial opacity" checked="false" help=""/>
+        <param name="show_sequence_features" type="boolean" truevalue="T" falsevalue="F" label="Draw features in the reference (GenBank) file" checked="false" help=""/>
+        <param name="blast_output" type="data" format="tabular" />
+    </inputs>
+    <outputs>
+        <data name="output" format="xml"/> 
+    </outputs>
+    <tests>
+    </tests>
+    <help>
+    </help>
+    <citations>
+        <citation type="bibtex">
+            @article{
+              stothard2004circular,
+              title={Circular genome visualization and exploration using CGView},
+              author={Stothard, Paul and Wishart, David S},
+              journal={Bioinformatics},
+              volume={21},
+              number={4},
+              pages={537--539},
+              year={2004},
+              publisher={Oxford University Press}
+            }
+    </citation>
+  </citations>
+</tool>