Mercurial > repos > dfornika > cgview

comparison cgview_xml_builder.xml @ 8:fece9758fea4 draft

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"planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/cgview commit 62e7cd82cb9b209bf3f797ae288916e88bbe8bc6-dirty"
author dfornika
date Fri, 01 Nov 2019 21:20:45 -0400
parents 4d65b79b638d
children a1018c7f80d1
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7:1393e1b26f0b 8:fece9758fea4
4 <requirement type="package" version="1.0">cgview</requirement> 4 <requirement type="package" version="1.0">cgview</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"> 6 <command detect_errors="exit_code">
7 <![CDATA[ 7 <![CDATA[
8 cgview_xml_builder.pl 8 cgview_xml_builder.pl
9 -gc_content $gc_content
10 -gc_skew $gc_skew
11 -at_content $at_content
12 -at_skew $at_skew
13 -average $average
9 -sequence '${reference}' 14 -sequence '${reference}'
10 -blast '${blast_output}' 15 -blast '${blast_output}'
11 -output '${output}' 16 -output '${output}'
12 ]]> 17 ]]>
13 </command> 18 </command>
14 <inputs> 19 <inputs>
15 <param name="reference" type="data" format="genbank,fasta" label="Input" help=""/> 20 <param name="reference" type="data" format="genbank,fasta" label="Reference" help=""/>
21 <param name="gc_content" type="boolean" truevalue="T" falsevalue="F" label="Display GC Content" checked="true" help=""/>
22 <param name="gc_skew" type="boolean" truevalue="T" falsevalue="F" label="Display GC Skew" checked="false" help=""/>
23 <param name="at_content" type="boolean" truevalue="T" falsevalue="F" label="Display AT Content" checked="false" help=""/>
24 <param name="at_skew" type="boolean" truevalue="T" falsevalue="F" label="Display AT Skew" checked="false" help=""/>
25 <param name="average" type="boolean" truevalue="T" falsevalue="F" label="Display deviation of GC and AT values from the average for the entire genome." checked="true" help=""/>
16 <param name="blast_output" type="data" format="tabular" /> 26 <param name="blast_output" type="data" format="tabular" />
17 </inputs> 27 </inputs>
18 <outputs> 28 <outputs>
19 <data name="output" format="xml"/> 29 <data name="output" format="xml"/>
20 </outputs> 30 </outputs>