Mercurial > repos > dfornika > blast_report_basic
diff templates/template2.tmpl @ 0:5dfd84907521 draft
planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/blast_report_basic commit bc359460bb66db7946cc68ccbd47cd479624c4a1-dirty
| author | dfornika |
|---|---|
| date | Tue, 03 Mar 2020 00:14:34 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/templates/template2.tmpl Tue Mar 03 00:14:34 2020 +0000 @@ -0,0 +1,127 @@ +#silent import time +#set $display_m = 20 +#set $header = '<tr class="header"><th>Accession</th><th>Description</th><th>Score</th><th>% Coverage</th><th>% Identity</th></tr>' +<html> + <head> + <style> + body { + font-size:0.75em; + } + table, tr { + width: 100%; + } + table { + border-collapse: collapse; + border: 1px solid black; + } + tr.header { + background-color: lightgrey; + } + th { + border: 1px solid black; + } + td { + border-left: 1px solid black; + border-right: 1px solid black; + border-bottom: 1px dashed grey; + } + td.descr { + font-size: 80%; + } + h3 { + page-break-before: always; + color: blue; + } + h3.first { + page-break-before: avoid; + } + span.super { + color: navy; + font-size: 75%; + vertical-align: top; + } + </style> + <script> + function toggle(id){ + var element = document.getElementById(id) + console.log(id) + if (element.style.display == 'none') { + //console.log(element.tagName); + if (element.tagName == 'TBODY') element.style.display = 'table-row-group'; + else if (element.tagName == 'TD') element.style.display = 'table-cell'; + else element.style.display = 'block'; + } else { + element.style.display = 'none'; + } + } + </script> + </head> + <body> + #set $q = 0 + #for $query in $queries + #set $bin_symbols = dict([($bin,$i) for $i, $bin in enumerate($query.bins, 1)]) + #set $m = 0 + <h3 id="${query.query_id}" #if $q == 0 then'class="first"' else '' #>$query.query_id</h3> + <br/> + <table id="${query.query_id}_matches"> + #set $num_of_euzby = -1 + #if len($query.matches) == 0: + <tr class="header"><th colspan="5">No matches to report</th></tr> + </table> + #else: + $header + #try + #set $priority = $query.bins['Euzby'] + #set $front = [] + #for $i in reversed($priority) + #silent $front.append($query.matches.pop($i)) + #end for + #set $num_of_euzby = len($front) + #silent $front.reverse() + #silent $front.extend($query.matches) + #set $query.matches = $front + #except + #pass + #end try + #for $match in $query.matches: + #if $m == $display_m + <tbody id="${query.query_id}_extra" style="display:none"> + #end if + ##if $m>0 and set($match.bins)!=set($query.matches[m-1].bins) + ##put an empty line to separate Euzby records from other records + #if $m==$num_of_euzby and $m>0 + <tr><td align="center" colspan="6"> </td></tr> + #end if + <tr> + <td>$match.subject_acc <span class="super">#echo ', '.join(sorted([str($bin_symbols[$bin]) for $bin in $match.bins]))#</span></td> + <td class="descr">$match.subject_descr</td> + <td>$match.score</td> + <td>$match.p_cov</td> + <td>$match.p_ident</td> + </tr> + #set $m += 1 + #end for + #if $m >= $display_m + </tbody> + <td id="${query.query_id}_show" align="center" colspan="6" >Displaying ${display_m}/$m matches. <a href="#${query.query_id}_extra" onclick="toggle('${query.query_id}_extra'); toggle('${query.query_id}_show'); toggle('${query.query_id}_hide');">Show the remaining results.</a></td> + <td id="${query.query_id}_hide" align="center" colspan="6" style="display:none"><a href="#${query.query_id}" onclick="toggle('${query.query_id}_extra'); toggle('${query.query_id}_show'); toggle('${query.query_id}_hide');">Hide the last #echo $m - $display_m # results.</a></td> + <tr> + </tr> + #end if + </table> + #if len($bin_symbols) > 0: + <p>#echo ', '.join(['<span class="super">%s</span> %s'%($bin_symbols[$bin],$bin) for $bin in $query.bins])#</p> + #end if + #end if + #if $query.pident_filtered > 0: + <p>$query.pident_filtered results filtered by % Identity.</p> + #end if + #if $query.kw_filtered > 0: + <p>$query.kw_filtered results filtered by description keywords: #echo ', '.join(list(["%s matches to '%s'" % (str($query.kw_filtered_breakdown[$kw]),$kw) for $kw in $query.kw_filtered_breakdown])) #.</p> + #end if + <p>Report produced on #echo time.strftime("%d/%m/%Y") #.</p> + <hr noshade size="1" color="blue"> + #set $q += 1 + #end for + </body> +</html>