Mercurial > repos > dfornika > blast_report_basic

comparison blast_report_basic.xml @ 27:efa564587d12 draft

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author dfornika
date Tue, 03 Mar 2020 09:57:51 +0000
parents d29bf2f7da9d
children 11f622d60501
comparison
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26:e2cab62e1943 27:efa564587d12
3 <command> 3 <command>
4 <![CDATA[ 4 <![CDATA[
5 python '${__tool_directory__}/blast_report.py' 5 python '${__tool_directory__}/blast_report.py'
6 --min-identity ${min_identity} 6 --min-identity ${min_identity}
7 --filter-keywords '${filter_keywords}' 7 --filter-keywords '${filter_keywords}'
8 #if str($reference_database_bins) != "None"
9 #for $name, $path in zip(str($reference_database_bins.fields.name).split(','), str($reference_database_bins.fields.path).split(',')):
10 -b '${name}' '${path}'
11 #end for
12 #end if
13 $discard_redundant 8 $discard_redundant
14 '${tabular_blast_report_input}' 9 '${tabular_blast_report_input}'
15 '${__tool_directory__}/templates/template2.tmpl' 10 '${__tool_directory__}/templates/template2.tmpl'
16 '${out_html}' 11 '${out_html}'
17 '${out_tab}' 12 '${out_tab}'
13 #if str($reference_database_bins) != "None"
14 #for $name, $path in zip(str($reference_database_bins.fields.name).split(','), str($reference_database_bins.fields.path).split(',')):
15 -b '${name}' '${path}'
16 #end for
17 #end if
18 ]]> 18 ]]>
19 </command> 19 </command>
20 <inputs> 20 <inputs>
21 <param name="tabular_blast_report_input" type="data" format="tabular" label="Tabular BLAST results (extended 25 columns + qcov)"/> 21 <param name="tabular_blast_report_input" type="data" format="tabular" label="Tabular BLAST results (extended 25 columns + qcov)"/>
22 <param name="min_identity" type="integer" min="90" max="100" value="97" label="Minimum percentage identity"/> 22 <param name="min_identity" type="integer" min="90" max="100" value="97" label="Minimum percentage identity"/>