Mercurial > repos > dfornika > blast_report_basic

comparison blast_report_basic.xml @ 24:96aa497b13c1 draft

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author dfornika
date Tue, 03 Mar 2020 09:39:16 +0000
parents 261235bbd475
children d29bf2f7da9d
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23:8d92b3b58f5e 24:96aa497b13c1
4 <![CDATA[ 4 <![CDATA[
5 python '${__tool_directory__}/blast_report.py' 5 python '${__tool_directory__}/blast_report.py'
6 --min-identity ${min_identity} 6 --min-identity ${min_identity}
7 --filter-keywords '${filter_keywords}' 7 --filter-keywords '${filter_keywords}'
8 #if str($reference_database_bins) != "None" 8 #if str($reference_database_bins) != "None"
9 #for $reference_database_bin in $reference_database_bins: 9 #for $name, $path in zip($reference_database_bins.fields.name, $reference_database_bins.fields.path):
10 -b '${reference_database_bin.fields.name}' '${reference_database_bin.fields.path}' 10 -b '${name}' '${path}'
11 #end for 11 #end for
12 #end if 12 #end if
13 $discard_redundant 13 $discard_redundant
14 '${tabular_blast_report_input}' 14 '${tabular_blast_report_input}'
15 '${__tool_directory__}/templates/template2.tmpl' 15 '${__tool_directory__}/templates/template2.tmpl'