Mercurial > repos > dfornika > blast_report_basic

comparison blast_report.py @ 9:2cf43f15a971 draft

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Uploaded
author dfornika
date Tue, 03 Mar 2020 05:41:07 +0000
parents c4e67d856c19
children 2b5862fee78e
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8:c4e67d856c19 9:2cf43f15a971
104 print('database bins: %s' % str([bin.label for bin in bins])) 104 print('database bins: %s' % str([bin.label for bin in bins]))
105 105
106 #FILTERS 106 #FILTERS
107 filter_pident = 0 107 filter_pident = 0
108 filter_kws = [] 108 filter_kws = []
109 if args.keyword_filter: 109 if args.filter_keywords:
110 filter_kws = args.keyword_filter.split(',') 110 filter_kws = args.filter_keywords.split(',')
111 print('minimum percent identity: %s filter_kws: %s' % (str(args.min_identity), str(filter_kws))) 111 print('minimum percent identity: %s filter_kws: %s' % (str(args.min_identity), str(filter_kws)))
112 112
113 if args.discard_redundant: 113 if args.discard_redundant:
114 print('Throwing out redundant hits...') 114 print('Throwing out redundant hits...')
115 115