Mercurial > repos > dfornika > blast_report_basic

comparison blast_report_basic.xml @ 22:261235bbd475 draft

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author dfornika
date Tue, 03 Mar 2020 09:29:50 +0000
parents bb237fe7fb05
children 96aa497b13c1
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21:bb237fe7fb05 22:261235bbd475
4 <![CDATA[ 4 <![CDATA[
5 python '${__tool_directory__}/blast_report.py' 5 python '${__tool_directory__}/blast_report.py'
6 --min-identity ${min_identity} 6 --min-identity ${min_identity}
7 --filter-keywords '${filter_keywords}' 7 --filter-keywords '${filter_keywords}'
8 #if str($reference_database_bins) != "None" 8 #if str($reference_database_bins) != "None"
9 -b '"${reference_database_bins.fields.name}"=${reference_database_bins.fields.path}' 9 #for $reference_database_bin in $reference_database_bins:
10 -b '${reference_database_bin.fields.name}' '${reference_database_bin.fields.path}'
11 #end for
10 #end if 12 #end if
11 $discard_redundant 13 $discard_redundant
12 '${tabular_blast_report_input}' 14 '${tabular_blast_report_input}'
13 '${__tool_directory__}/templates/template2.tmpl' 15 '${__tool_directory__}/templates/template2.tmpl'
14 '${out_html}' 16 '${out_html}'