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comparison blast_report.xml @ 6:e50d49d4130a draft

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planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit 604191e1284a3d5f8132eec71bb8629901811f8a-dirty
author dfornika
date Thu, 12 Sep 2019 00:45:25 -0400
parents 0f048e2548cb
children 848fbcaf21d6
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5:0f048e2548cb 6:e50d49d4130a
2 <description>Report on BLAST results</description> 2 <description>Report on BLAST results</description>
3 <command > 3 <command >
4 <![CDATA[ 4 <![CDATA[
5 '$__tool_directory__/blast_report.py' 5 '$__tool_directory__/blast_report.py'
6 '${in_tab}' 6 '${in_tab}'
7 '${tmpl}' 7 '${tmpl.fields.path}'
8 '${out_html}' 8 '${out_html}'
9 '${out_tab}' 9 '${out_tab}'
10 -f '{$filter_pident}:$filter_kws' 10 -f '{$filter_pident}:$filter_kws'
11 #if str($bins) == "None" 11 #if str($bins) == "None"
12 #pass 12 #pass
13 #else 13 #else
14 -b "${bins.path}" 14 -b "${bins.fields.path}"
15 #end if 15 #end if
16 #if $hsp_bool 16 #if $hsp_bool
17 -r 17 -r
18 #end if 18 #end if
19 ]]> 19 ]]>
30 <param name="filter_kws" type="text" size="50" label="Comma-separated list of description keyword filters" value="bovine,clone,environmental,swine,uncultivated,uncultured,unidentified"/> 30 <param name="filter_kws" type="text" size="50" label="Comma-separated list of description keyword filters" value="bovine,clone,environmental,swine,uncultivated,uncultured,unidentified"/>
31 <param name="bins" type="select" label="Database bins" multiple="true" display="checkboxes"> 31 <param name="bins" type="select" label="Database bins" multiple="true" display="checkboxes">
32 <options from_data_table="blast_report_bins"> 32 <options from_data_table="blast_report_bins">
33 <column name="value" index="0"/> 33 <column name="value" index="0"/>
34 <column name="name" index="1"/> 34 <column name="name" index="1"/>
35 <column name="path" index="2"/>
36 </options> 35 </options>
37 </param> 36 </param>
38 <!--<repeat name="hist_bins" title="History database bins"> 37 <!--<repeat name="hist_bins" title="History database bins">
39 <param name="filter" type="data" format="csv" label="History database bin"/> 38 <param name="filter" type="data" format="csv" label="History database bin"/>
40 </repeat>--> 39 </repeat>-->