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comparison blast_report.xml @ 4:d6423655d2b5 draft

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planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit e8b469f0fed66159f07bfc3904b0c4bce9a16d09-dirty
author dfornika
date Thu, 12 Sep 2019 00:26:04 -0400
parents a56a5519d60a
children 0f048e2548cb
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3:ca70ffc00185 4:d6423655d2b5
19 ]]> 19 ]]>
20 </command> 20 </command>
21 <inputs> 21 <inputs>
22 <param name="in_tab" type="data" format="tabular" label="Tabular BLAST results (extended 26 columns)"/> 22 <param name="in_tab" type="data" format="tabular" label="Tabular BLAST results (extended 26 columns)"/>
23 <param name="tmpl" type="select" optional="false" label="Report template"> 23 <param name="tmpl" type="select" optional="false" label="Report template">
24 <options from_file="bccdc_blast_report_templates.loc"> 24 <options from_data_table="blast_report_templates">
25 <column name="value" index="1"/> 25 <column name="value" index="0"/>
26 <column name="name" index="0"/> 26 <column name="name" index="1"/>
27 </options> 27 </options>
28 </param> 28 </param>
29 <param name="filter_pident" type="integer" min="90" max="100" value="97" label="Minimum percentage identity"/> 29 <param name="filter_pident" type="integer" min="90" max="100" value="97" label="Minimum percentage identity"/>
30 <param name="filter_kws" type="text" size="50" label="Comma-separated list of description keyword filters" value="bovine,clone,environmental,swine,uncultivated,uncultured,unidentified"/> 30 <param name="filter_kws" type="text" size="50" label="Comma-separated list of description keyword filters" value="bovine,clone,environmental,swine,uncultivated,uncultured,unidentified"/>
31 <param name="bins" type="select" label="Database bins" multiple="true" display="checkboxes"> 31 <param name="bins" type="select" label="Database bins" multiple="true" display="checkboxes">
32 <options from_data_table="blast_report_bins"> 32 <options from_data_table="blast_report_bins">
33 <column name="value" index="1"/> 33 <column name="value" index="0"/>
34 <column name="name" index="0"/> 34 <column name="name" index="1"/>
35 </options> 35 </options>
36 </param> 36 </param>
37 <!--<repeat name="hist_bins" title="History database bins"> 37 <!--<repeat name="hist_bins" title="History database bins">
38 <param name="filter" type="data" format="csv" label="History database bin"/> 38 <param name="filter" type="data" format="csv" label="History database bin"/>
39 </repeat>--> 39 </repeat>-->