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comparison augur_filter.xml @ 1:892c6690a1e8 draft default tip

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/augur commit a71ecf1b4a86227084935c6f60dfd130b7d0997b-dirty
author dfornika
date Mon, 08 Apr 2019 13:27:08 -0400
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0:20ad934c5536 1:892c6690a1e8
1 <tool id="augur_filter" name="augur filter" version="@TOOL_VERSION@+galaxy0">
2 <description></description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">augur</requirement>
8 </requirements>
9 <version_command>augur --version</version_command>
10 <command detect_errors="exit_code"><![CDATA[
11 augur filter
12 --sequences '$sequences'
13 --metadata '$metadata'
14 --exclude '$exclude'
15 --output '$output'
16 ]]></command>
17 <inputs>
18 <param name="sequences" type="data" format="fasta" label="Sequences"/>
19 <param name="metadata" type="data" format="tabular" label="Metadata"/>
20 <param name="exclude" type="data" format="tabular" label="Excluded Strains"/>
21 </inputs>
22 <outputs>
23 <data name="output" format="fasta" />
24 </outputs>
25 <tests>
26 <test>
27 <param name="sequences" value="augur_filter_test_0_sequences.input.fasta" />
28 <param name="metadata" value="augur_filter_test_0_metadata.input.csv" />
29 <param name="exclude" value="augur_filter_test_0_excluded_strains.input.csv" />
30 <output name="output" file="augur_filter_test_0_output.output.fasta" />
31 </test>
32 </tests>
33 <help><![CDATA[
34 Filter and subsample a sequence set.
35 ]]></help>
36 <expand macro="citations" />
37 </tool>