# HG changeset patch # User devteam # Date 1513532247 18000 # Node ID d449deb3315989dceca7f8d48a77e0226406866c # Parent 2d28f96a309a7ad5d0b9f1358c94e633d6261c2e planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/xy_plot commit d792f43f02cd0d6ab74411c21e0897937cb075aa diff -r 2d28f96a309a -r d449deb33159 r_wrapper.sh --- a/r_wrapper.sh Wed Dec 07 18:29:11 2016 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,23 +0,0 @@ -#!/bin/sh - -### Run R providing the R script in $1 as standard input and passing -### the remaining arguments on the command line - -# Function that writes a message to stderr and exits -function fail -{ - echo "$@" >&2 - exit 1 -} - -# Ensure R executable is found -which R > /dev/null || fail "'R' is required by this tool but was not found on path" - -# Extract first argument -infile=$1; shift - -# Ensure the file exists -test -f $infile || fail "R input file '$infile' does not exist" - -# Invoke R passing file named by first argument to stdin -R --vanilla --slave $* < $infile diff -r 2d28f96a309a -r d449deb33159 tool_dependencies.xml --- a/tool_dependencies.xml Wed Dec 07 18:29:11 2016 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ - - - - - - diff -r 2d28f96a309a -r d449deb33159 xy_plot.xml --- a/xy_plot.xml Wed Dec 07 18:29:11 2016 -0500 +++ b/xy_plot.xml Sun Dec 17 12:37:27 2017 -0500 @@ -1,10 +1,9 @@ for multiple series and graph types - R - fontconfig + r-base - r_wrapper.sh $script_file + Rscript $script_file ## Setup R error handling to go to stderr