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comparison windowSplitter.xml @ 2:1fb384fb950e draft

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planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
author devteam
date Tue, 13 Oct 2015 12:36:17 -0400
parents 477a0cfe6e6c
children 1011f028f09d
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1:477a0cfe6e6c 2:1fb384fb950e
2 <description></description> 2 <description></description>
3 <command interpreter="python">windowSplitter.py $input $size $out_file1 ${wintype.choice} ${wintype.offset} -l ${input.metadata.chromCol},${input.metadata.startCol},${input.metadata.endCol},${input.metadata.strandCol}</command> 3 <command interpreter="python">windowSplitter.py $input $size $out_file1 ${wintype.choice} ${wintype.offset} -l ${input.metadata.chromCol},${input.metadata.startCol},${input.metadata.endCol},${input.metadata.strandCol}</command>
4 <inputs> 4 <inputs>
5 <!--<param label="Genome" name="dbkey" type="genomebuild"/>--> 5 <!--<param label="Genome" name="dbkey" type="genomebuild"/>-->
6 <param format="interval" name="input" type="data" label="Select data"/> 6 <param format="interval" name="input" type="data" label="Select data"/>
7 <param name="size" size="10" type="integer" value="500" label="Window size"/> 7 <param name="size" type="integer" value="500" label="Window size"/>
8 <conditional name="wintype"> 8 <conditional name="wintype">
9 <param name="choice" type="select" label="Make sliding windows?"> 9 <param name="choice" type="select" label="Make sliding windows?">
10 <option value="0" selected="true">No</option> 10 <option value="0" selected="true">No</option>
11 <option value="1">Yes</option> 11 <option value="1">Yes</option>
12 </param> 12 </param>
13 <when value="0"> 13 <when value="0">
14 <param name="offset" type="hidden" value="0" /> 14 <param name="offset" type="hidden" value="0" />
15 </when> 15 </when>
16 <when value="1"> 16 <when value="1">
17 <param name="offset" size="10" type="integer" value="10" label="Offset size"/> 17 <param name="offset" type="integer" value="10" label="Offset size"/>
18 </when> 18 </when>
19 </conditional> 19 </conditional>
20 </inputs> 20 </inputs>
21 <outputs> 21 <outputs>
22 <data format="interval" name="out_file1" metadata_source="input"/> 22 <data format="interval" name="out_file1" metadata_source="input"/>