Mercurial > repos > devteam > vcftools_slice
comparison vcftools_slice.xml @ 1:e88ac3aabdc4 draft default tip
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| author | devteam |
|---|---|
| date | Sun, 24 Nov 2013 10:48:58 -0500 |
| parents | fb25b685d590 |
| children |
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| 0:fb25b685d590 | 1:e88ac3aabdc4 |
|---|---|
| 1 <tool id="vcftools_slice" name="Slice VCF" version="0.1"> | 1 <tool id="vcftools_slice" name="Slice VCF" version="0.1"> |
| 2 <description>to get data from selected regions</description> | 2 <description>to get data from selected regions</description> |
| 3 | 3 |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package">vcftools</requirement> | 5 <requirement type="binary">echo</requirement> |
| 6 <requirement type="package" version="0.1.11">vcftools</requirement> | |
| 6 </requirements> | 7 </requirements> |
| 7 | 8 |
| 8 <command> | 9 <command> |
| 9 ## Only works if input is sorted. | 10 ## Only works if input is sorted. |
| 10 vcf-sort ${input} > sorted.vcf | 11 vcf-sort ${input} > sorted.vcf |