Mercurial > repos > devteam > vcftools_annotate

diff vcftools_annotate.xml @ 6:a6e0edfcfdae draft default tip

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planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
author devteam
date Tue, 13 Oct 2015 12:59:18 -0400
parents 765f626ebd5a
children
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--- a/vcftools_annotate.xml	Sun Nov 24 10:56:14 2013 -0500
+++ b/vcftools_annotate.xml	Tue Oct 13 12:59:18 2015 -0400
@@ -1,5 +1,5 @@
 <tool id="vcftools_annotate" name="Annotate" version="0.1">
-    <description>a VCF dataset with filters</description>
+    <description>a VCF dataset with custom filters</description>
 
     <requirements>
         <requirement type="binary">echo</requirement>
@@ -47,8 +47,14 @@
     </tests>
 
     <help>
-        Please see the VCFtools `documentation`__ for help and further information.
+Annotates VCF dataset with custom annotations. For example, if this format tag is used for allele frequency:
+
+##FORMAT=&lt;ID=FREQ,Number=1,Type=String,Description=&quot;Variant allele frequency&quot;&gt;
 
-        .. __: http://vcftools.sourceforge.net/docs.html
+you can add a filter for allele frequency using &quot;FORMAT/FREQ&quot; as the tag name and the condition &quot;>= [desired allele freq]&quot;
+
+Please see the VCFtools `documentation`__ for help and further information.
+
+.. __: http://vcftools.sourceforge.net/perl_module.html#vcf-annotate
     </help>
 </tool>