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comparison vcfsort.xml @ 3:24f96edb5b29 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfsort commit 36e9065027cc7bf721e9d203208477ee88906c57"
author iuc
date Thu, 23 Jan 2020 12:59:45 +0000
parents d92d6f631ff5
children 694dfc3f5d45
comparison
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2:d92d6f631ff5 3:24f96edb5b29
2 <description>Sort VCF dataset by coordinate</description> 2 <description>Sort VCF dataset by coordinate</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <command><![CDATA[ 6 <command><![CDATA[
7 (grep ^"#" "${input1}" && grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > "${out_file1}" 7 (grep ^"#" "${input1}" && grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > '${out_file1}'
8 ]]></command> 8 ]]></command>
9 <inputs> 9 <inputs>
10 <param format="vcf" name="input1" type="data" label="Select VCF dataset"/> 10 <param format="vcf" name="input1" type="data" label="Select VCF dataset"/>
11 </inputs> 11 </inputs>
12 <outputs> 12 <outputs>