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comparison vcfselectsamples.xml @ 3:d329c92987bf draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfselectsamples commit 36e9065027cc7bf721e9d203208477ee88906c57"
author iuc
date Thu, 23 Jan 2020 12:59:22 +0000
parents 67a65042c64d
children
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2:67a65042c64d 3:d329c92987bf
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <command>vcfkeepsamples "${input1}" ${ ' '.join( map( lambda x:'"%s"' % ( x ), str($vcf_samples ).split(",") ) ) } > "${out_file1}"</command> 8 <command>vcfkeepsamples '${input1}' ${ ' '.join( map( lambda x:'"%s"' % ( x ), str($vcf_samples ).split(",") ) ) } > '${out_file1}'</command>
9 <inputs> 9 <inputs>
10 <param format="vcf" name="input1" type="data" label="Select VCF dataset" /> 10 <param format="vcf" name="input1" type="data" label="Select VCF dataset" />
11 <param name="vcf_samples" type="select" label="Check to keep samples; Uncheck to remove" display="checkboxes" multiple="true"> 11 <param name="vcf_samples" type="select" label="Check to keep samples; Uncheck to remove" display="checkboxes" multiple="true">
12 <options> 12 <options>
13 <filter type="data_meta" ref="input1" key="sample_names" /> 13 <filter type="data_meta" ref="input1" key="sample_names" />