Mercurial > repos > devteam > vcfhethom

comparison vcfhethom.xml @ 3:31712f1ff0ec draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfhethom commit 36e9065027cc7bf721e9d203208477ee88906c57"
author iuc
date Thu, 23 Jan 2020 12:57:49 +0000
parents d3482e14d5a4
children
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2:d3482e14d5a4 3:31712f1ff0ec
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <command> 8 <command>
9
10 #if str($analysis_type) == "count": 9 #if str($analysis_type) == "count":
11 vcfhetcount "${vcf_input}" > "${out_file1}" 10 vcfhetcount '${vcf_input}' > '${out_file1}'
12 #elif str($analysis_type) == "ratio": 11 #elif str($analysis_type) == "ratio":
13 vcfhethomratio "${vcf_input}" > "${out_file1}" 12 vcfhethomratio '${vcf_input}' > '${out_file1}'
14 #elif str($analysis_type) == "allele_count": 13 #elif str($analysis_type) == "allele_count":
15 vcfcountalleles "${vcf_input}" > "${out_file1}" 14 vcfcountalleles '${vcf_input}' > '${out_file1}'
16 #end if 15 #end if
17
18 </command> 16 </command>
19 <inputs> 17 <inputs>
20 <param name="analysis_type" type="select" display="radio" label="Select type of calculation:"> 18 <param name="analysis_type" type="select" display="radio" label="Select type of calculation:">
21 <option value="count">Compute the number of heterozygotes</option> 19 <option value="count">Compute the number of heterozygotes</option>
22 <option value="ratio">Compute the ratio between heterozygotes and homozygotes</option> 20 <option value="ratio">Compute the ratio between heterozygotes and homozygotes</option>