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comparison vcfhethom.xml @ 1:4d7bf6277295 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfhethom commit 0b9b6512272b82637c2f1e831367e89aed77ae79
author devteam
date Thu, 15 Sep 2016 16:05:37 -0400
parents 1de250ea8c1a
children d3482e14d5a4
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0:1de250ea8c1a 1:4d7bf6277295
1 <tool id="vcfhethom" name="VCFhetHomAlleles:" version="0.0.3"> 1 <tool id="vcfhethom" name="VCFhetHomAlleles:" version="@WRAPPER_VERSION@.0">
2 <description>Count the number of heterozygotes and alleles, compute het/hom ratio</description> 2 <description>Count the number of heterozygotes and alleles, compute het/hom ratio</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"></expand> 6 <expand macro="requirements"/>
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <command> 8 <command>
9 9
10 #if str($analysis_type) == "count": 10 #if str($analysis_type) == "count":
11 vcfhetcount "${vcf_input}" > "${out_file1}" 11 vcfhetcount "${vcf_input}" > "${out_file1}"
13 vcfhethomratio "${vcf_input}" > "${out_file1}" 13 vcfhethomratio "${vcf_input}" > "${out_file1}"
14 #elif str($analysis_type) == "allele_count": 14 #elif str($analysis_type) == "allele_count":
15 vcfcountalleles "${vcf_input}" > "${out_file1}" 15 vcfcountalleles "${vcf_input}" > "${out_file1}"
16 #end if 16 #end if
17 17
18 </command> 18 </command>
19
20 <inputs> 19 <inputs>
21 <param name="analysis_type" type="select" display="radio" label="Select type of calculation:"> 20 <param name="analysis_type" type="select" display="radio" label="Select type of calculation:">
22 <option value="count">Compute the number of heterozygotes</option> 21 <option value="count">Compute the number of heterozygotes</option>
23 <option value="ratio">Compute the ratio between heterozygotes and homozygotes</option> 22 <option value="ratio">Compute the ratio between heterozygotes and homozygotes</option>
24 <option value="allele_count">Compute the total number of alleles</option> 23 <option value="allele_count">Compute the total number of alleles</option>