# HG changeset patch
# User devteam
# Date 1473969847 14400
# Node ID 5fe607441f62e2dd7c72b545ab5da73c1757013c
# Parent  ac725e729ac6da99866ec5e2cc2f45644e631eae
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfflatten commit 0b9b6512272b82637c2f1e831367e89aed77ae79

diff -r ac725e729ac6 -r 5fe607441f62 macros.xml
--- a/macros.xml	Mon Nov 09 12:32:13 2015 -0500
+++ b/macros.xml	Thu Sep 15 16:04:07 2016 -0400
@@ -1,7 +1,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="8a5602bf07">vcflib</requirement>
+            <requirement type="package" version="1.0.0_rc1">vcflib</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -10,6 +10,7 @@
             <exit_code range="1:" level="fatal" />
         </stdio>
     </xml>
+   <token name="@WRAPPER_VERSION@">1.0.0_rc1</token>
    	<xml name="citations">
    	     <citations>
              <citation type="bibtex">
diff -r ac725e729ac6 -r 5fe607441f62 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Nov 09 12:32:13 2015 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="vcflib" version="8a5602bf07">
-        <repository changeset_revision="3ac0905f7b7c" name="package_vcflib_8a5602bf07" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-</tool_dependency>
diff -r ac725e729ac6 -r 5fe607441f62 vcfflatten.xml
--- a/vcfflatten.xml	Mon Nov 09 12:32:13 2015 -0500
+++ b/vcfflatten.xml	Thu Sep 15 16:04:07 2016 -0400
@@ -1,30 +1,30 @@
-<tool id="vcfflatten2" name="VCFflatten:" version="0.0.3">
-  <description>Removes multi-allelic sites by picking the most common alternate</description>
-  <macros>
-    <import>macros.xml</import>
-  </macros>
-  <expand macro="requirements"></expand>
-  <expand macro="stdio" />
-  <command>vcfflatten "${input1}" > "${out_file1}"</command>
-  <inputs>
-    <param format="vcf" name="input1" type="data" label="Select VCF dataset"/>
-  </inputs>
-  <outputs>
-    <data format="vcf" name="out_file1" />
-  </outputs>
-  <tests>
-    <test>
-      <param name="input1" value="vcfflatten-input1.vcf"/>
-      <output name="out_file1" file="vcfflatten-test1.vcf"/>
-    </test>
-    </tests>
-  <help>
-
-Removes multi-allelic sites by picking the most common alternate.  Requires allele frequency specification 'AF' and use of 'G' and 'A' to specify the fields which vary according to the Allele or Genotype.
-
-----
-
-Vcfflatten @IS_PART_OF_VCFLIB@
-</help>
-  <expand macro="citations" />
-</tool>
+<tool id="vcfflatten2" name="VCFflatten:" version="@WRAPPER_VERSION@.0">
+  <description>Removes multi-allelic sites by picking the most common alternate</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements"/>
+  <expand macro="stdio" />
+  <command>vcfflatten "${input1}" > "${out_file1}"</command>
+  <inputs>
+    <param format="vcf" name="input1" type="data" label="Select VCF dataset"/>
+  </inputs>
+  <outputs>
+    <data format="vcf" name="out_file1" />
+  </outputs>
+  <tests>
+    <test>
+      <param name="input1" value="vcfflatten-input1.vcf"/>
+      <output name="out_file1" file="vcfflatten-test1.vcf"/>
+    </test>
+    </tests>
+  <help>
+
+Removes multi-allelic sites by picking the most common alternate.  Requires allele frequency specification 'AF' and use of 'G' and 'A' to specify the fields which vary according to the Allele or Genotype.
+
+----
+
+Vcfflatten @IS_PART_OF_VCFLIB@
+</help>
+  <expand macro="citations" />
+</tool>