Mercurial > repos > devteam > variant_select

comparison variant_select.xml @ 1:96de2494d113 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
author devteam
date Tue, 13 Oct 2015 12:48:40 -0400
parents 0ac94ceefd33
children
comparison
equal deleted inserted replaced
0:0ac94ceefd33 1:96de2494d113
1 <tool id="gatk_variant_select" name="Select Variants" version="0.0.2"> 1 <tool id="gatk_variant_select" name="Select Variants" version="0.0.3">
2 <description>from VCF files</description> 2 <description>from VCF files</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.4">gatk</requirement> 4 <requirement type="package" version="1.4">gatk</requirement>
5 </requirements> 5 </requirements>
6 <macros> 6 <macros>
152 152
153 <repeat name="sample_file_repeat" title="Samples by file" help="-sf,--sample_file &amp;lt;sample_file&amp;gt;"> 153 <repeat name="sample_file_repeat" title="Samples by file" help="-sf,--sample_file &amp;lt;sample_file&amp;gt;">
154 <param name="sample_file" type="data" format="txt" label="File containing a list of samples (one per line) to include" /> 154 <param name="sample_file" type="data" format="txt" label="File containing a list of samples (one per line) to include" />
155 </repeat> 155 </repeat>
156 156
157 <param name="input_keep_ids" type="data" format="text" label="Only emit sites whose ID is found in this file" optional="True" help="-IDs,--keepIDs &amp;lt;keepIDs&amp;gt;"/> 157 <param name="input_keep_ids" type="data" format="txt" label="Only emit sites whose ID is found in this file" optional="True" help="-IDs,--keepIDs &amp;lt;keepIDs&amp;gt;"/>
158 158
159 <param name="keep_original_AC" type="boolean" truevalue="--keepOriginalAC" falsevalue="" label="Don't update the AC, AF, or AN values in the INFO field after selecting" help="-keepOriginalAC,--keepOriginalAC" /> 159 <param name="keep_original_AC" type="boolean" truevalue="--keepOriginalAC" falsevalue="" label="Don't update the AC, AF, or AN values in the INFO field after selecting" help="-keepOriginalAC,--keepOriginalAC" />
160 160
161 <param name="mendelian_violation" type="boolean" truevalue="--mendelianViolation" falsevalue="" label="output mendelian violation sites only" help="-mv,--mendelianViolation" /> 161 <param name="mendelian_violation" type="boolean" truevalue="--mendelianViolation" falsevalue="" label="output mendelian violation sites only" help="-mv,--mendelianViolation" />
162 162