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comparison substitutions.xml @ 1:385a5c3d7244 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/substitutions commit f929353ffb0623f2218d7dec459c7da62f3b0d24"
author devteam
date Mon, 06 Jul 2020 18:13:37 +0000
parents 190735ce4c2b
children
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0:190735ce4c2b 1:385a5c3d7244
1 <tool id="substitutions1" name="Fetch substitutions " version="1.0.0"> 1 <tool id="substitutions1" name="Fetch substitutions " version="1.0.1">
2 <description> from pairwise alignments</description> 2 <description> from pairwise alignments</description>
3 <command interpreter="python"> 3 <requirements>
4 substitutions.py 4 <requirement type="package" version="0.8.8">bx-python</requirement>
5 $input 5 </requirements>
6 $out_file1 6 <command>
7 </command> 7 python '$__tool_directory__/substitutions.py'
8 <inputs> 8 '$input'
9 <param format="maf" name="input" type="data" label="Select pair-wise alignment data"/> 9 '$out_file1'
10 </inputs> 10 </command>
11 <outputs> 11 <inputs>
12 <data format="tabular" name="out_file1" metadata_source="input"/> 12 <param format="maf" name="input" type="data" label="Select pair-wise alignment data"/>
13 </outputs> 13 </inputs>
14 14 <outputs>
15 <tests> 15 <data format="tabular" name="out_file1" metadata_source="input"/>
16 <test> 16 </outputs>
17 <param name="input" value="Interval2Maf_pairwise_out.maf"/> 17 <tests>
18 <output name="out_file1" file="subs.out"/> 18 <test>
19 </test> 19 <param name="input" value="Interval2Maf_pairwise_out.maf"/>
20 </tests> 20 <output name="out_file1" file="subs.out"/>
21 <help> 21 </test>
22 </tests>
23 <help>
22 24
23 .. class:: infomark 25 .. class:: infomark
24 26
25 **What it does** 27 **What it does**
26 28
32 34
33 **Note** 35 **Note**
34 36
35 Any block/s not containing exactly two sequences, will be omitted. 37 Any block/s not containing exactly two sequences, will be omitted.
36 38
37 </help> 39 </help>
38 </tool> 40 </tool>