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comparison scatterplot.xml @ 3:1dacc8aeb452 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/scatterplot commit 93df3895fbf2fa44ff279303093fb89b79081687
author devteam
date Thu, 15 Sep 2016 05:36:51 -0400
parents 53eb2c412783
children 113045fca1aa
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2:53eb2c412783 3:1dacc8aeb452
1 <tool id="scatterplot_rpy" name="Scatterplot" version="1.0.1"> 1 <tool id="scatterplot_rpy" name="Scatterplot" version="1.0.2">
2 <description>of two numeric columns</description> 2 <description>of two numeric columns</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.9">numpy</requirement> 4 <requirement type="package" version="1.9">numpy</requirement>
5 <requirement type="package" version="1.0.3">rpy</requirement> 5 <!-- explicit R requirement is necessary for toolshed package, conda rpy2 comes with R -->
6 <requirement type="package" version="3.2.1">R</requirement>
7 <requirement type="package" version="2.7.8">rpy2</requirement>
6 </requirements> 8 </requirements>
7 <command interpreter="python">scatterplot.py $input $out_file1 $col1 $col2 "$title" "$xlab" "$ylab"</command> 9 <command interpreter="python">scatterplot.py $input $out_file1 $col1 $col2 "$title" "$xlab" "$ylab"</command>
8 <inputs> 10 <inputs>
9 <param name="input" type="data" format="tabular" label="Dataset" help="Dataset missing? See TIP below"/> 11 <param name="input" type="data" format="tabular" label="Dataset" help="Dataset missing? See TIP below"/>
10 <param name="col1" type="data_column" data_ref="input" numerical="True" label="Numerical column for x axis" /> 12 <param name="col1" type="data_column" data_ref="input" numerical="True" label="Numerical column for x axis" />
14 <param name="ylab" type="text" value="V2" label="Label for y axis"/> 16 <param name="ylab" type="text" value="V2" label="Label for y axis"/>
15 </inputs> 17 </inputs>
16 <outputs> 18 <outputs>
17 <data format="pdf" name="out_file1" /> 19 <data format="pdf" name="out_file1" />
18 </outputs> 20 </outputs>
19 <!-- TODO: uncomment the following test when we have tools.update_state() working for
20 multiple dependents with the same dependency.
21 <tests> 21 <tests>
22 <test> 22 <test>
23 <param name="input" value="scatterplot_in1.tabular" ftype="tabular"/> 23 <param name="input" value="scatterplot_in1.tabular" ftype="tabular"/>
24 <param name="col1" value="2"/> 24 <param name="col1" value="2"/>
25 <param name="col2" value="3"/> 25 <param name="col2" value="3"/>
26 <param name="title" value="Scatterplot"/> 26 <param name="title" value="Scatterplot"/>
27 <param name="xlab" value="V1"/> 27 <param name="xlab" value="V1"/>
28 <param name="ylab" value="V2"/> 28 <param name="ylab" value="V2"/>
29 <output name="out_file1" file="scatterplot_out1.pdf" /> 29 <output name="out_file1" file="scatterplot_out1.pdf" compare="sim_size" />
30 </test> 30 </test>
31 </tests> 31 </tests>
32 -->
33 <help> 32 <help>
34 .. class:: infomark 33 .. class:: infomark
35 34
36 **TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert* 35 **TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
37 36