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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_stats commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
author devteam
date Fri, 18 Dec 2015 19:47:08 -0500
parents cc56fc603e53
children
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# Summary Numbers

raw total sequences:	200
filtered sequences:	0
sequences:	200
is sorted:	1
1st fragments:	100
last fragments:	100
reads mapped:	25
reads mapped and paired:	0	# paired-end technology bit set + both mates mapped
reads unmapped:	175
reads properly paired:	0	# proper-pair bit set
reads paired:	200	# paired-end technology bit set
reads duplicated:	0	# PCR or optical duplicate bit set
reads MQ0:	6	# mapped and MQ=0
reads QC failed:	0
non-primary alignments:	0
total length:	50200	# ignores clipping
bases mapped:	6275	# ignores clipping
bases mapped (cigar):	6275	# more accurate
bases trimmed:	0
bases duplicated:	0
mismatches:	591	# from NM fields
error rate:	9.418327e-02	# mismatches / bases mapped (cigar)
average length:	251
maximum length:	251
average quality:	34.7
insert size average:	0.0
insert size standard deviation:	0.0
inward oriented pairs:	0
outward oriented pairs:	0
pairs with other orientation:	0
pairs on different chromosomes:	0