Mercurial > repos > devteam > samtools_stats

diff test-data/samtools_stats_out1.tab @ 0:cd6eb75c9819 draft
Uploaded initial tool definition.
author: devteam
date: Mon, 20 Oct 2014 14:56:49 -0400
children: cc56fc603e53
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/samtools_stats_out1.tab	Mon Oct 20 14:56:49 2014 -0400
@@ -0,0 +1,951 @@
+# This file was produced by samtools stats (1.1+htslib-1.1) and can be plotted using plot-bamstats
+# The command line was:  stats --coverage 1,1000,1 --GC-depth 2000.0 --insert-size 8000 --most-inserts 0.99 --trim-quality 0 /tmp/tmptYfjRJ/tmpl0qHNN/database/files/000/dataset_929.dat
+# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
+# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
+CHK	76594422	342222f2	06e86208
+# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
+SN	raw total sequences:	1000
+SN	filtered sequences:	0
+SN	sequences:	1000
+SN	is sorted:	1
+SN	1st fragments:	500
+SN	last fragments:	500
+SN	reads mapped:	972
+SN	reads mapped and paired:	954	# paired-end technology bit set + both mates mapped
+SN	reads unmapped:	28
+SN	reads properly paired:	0	# proper-pair bit set
+SN	reads paired:	1000	# paired-end technology bit set
+SN	reads duplicated:	0	# PCR or optical duplicate bit set
+SN	reads MQ0:	0	# mapped and MQ=0
+SN	reads QC failed:	0
+SN	non-primary alignments:	0
+SN	total length:	70000	# ignores clipping
+SN	bases mapped:	68040	# ignores clipping
+SN	bases mapped (cigar):	68040	# more accurate
+SN	bases trimmed:	0
+SN	bases duplicated:	0
+SN	mismatches:	1237	# from NM fields
+SN	error rate:	1.818048e-02	# mismatches / bases mapped (cigar)
+SN	average length:	70
+SN	maximum length:	70
+SN	average quality:	17.0
+SN	insert size average:	495.1
+SN	insert size standard deviation:	48.9
+SN	inward oriented pairs:	477
+SN	outward oriented pairs:	0
+SN	pairs with other orientation:	0
+SN	pairs on different chromosomes:	0
+# First Fragment Qualitites. Use `grep ^FFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+FFQ	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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+FFQ	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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+FFQ	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	60	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	61	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	66	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	68	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	70	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+# Last Fragment Qualitites. Use `grep ^LFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+LFQ	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	60	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	61	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	66	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	68	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	70	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	500	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+# GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part.
+GCF	14.82	0
+GCF	31.16	2
+GCF	33.42	6
+GCF	34.92	4
+GCF	36.18	6
+GCF	37.44	12
+GCF	38.94	28
+GCF	40.45	34
+GCF	41.96	37
+GCF	43.47	46
+GCF	44.72	55
+GCF	45.98	57
+GCF	47.49	68
+GCF	48.99	60
+GCF	50.50	27
+GCF	52.01	18
+GCF	53.52	15
+GCF	54.77	9
+GCF	56.03	4
+GCF	57.54	3
+GCF	59.05	2
+GCF	60.55	4
+GCF	62.06	0
+GCF	63.32	1
+# GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part.
+GCL	14.07	0
+GCL	28.89	1
+GCL	30.40	3
+GCL	31.91	1
+GCL	33.42	2
+GCL	34.92	4
+GCL	36.18	8
+GCL	37.44	16
+GCL	38.94	31
+GCL	40.45	40
+GCL	41.96	39
+GCL	43.47	55
+GCL	44.72	46
+GCL	45.98	61
+GCL	47.49	53
+GCL	48.99	50
+GCL	50.50	32
+GCL	52.01	23
+GCL	53.52	11
+GCL	54.77	9
+GCL	56.03	8
+GCL	57.54	3
+GCL	61.06	1
+# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle, and A,C,G,T counts [%]
+GCC	1	21.50	23.30	24.50	30.70
+GCC	2	21.10	22.20	22.50	34.20
+GCC	3	22.20	20.50	26.80	30.50
+GCC	4	24.40	21.50	21.50	32.60
+GCC	5	23.50	21.10	25.60	29.80
+GCC	6	26.30	21.80	20.40	31.50
+GCC	7	25.40	20.50	22.00	32.10
+GCC	8	23.90	19.20	27.00	29.90
+GCC	9	23.70	22.70	22.00	31.60
+GCC	10	22.50	22.00	24.10	31.40
+GCC	11	22.40	21.50	22.10	34.00
+GCC	12	25.20	18.00	24.50	32.30
+GCC	13	23.70	20.80	21.70	33.80
+GCC	14	24.60	23.00	22.40	30.00
+GCC	15	25.50	22.30	22.50	29.70
+GCC	16	24.10	21.40	23.60	30.90
+GCC	17	24.30	21.00	23.90	30.80
+GCC	18	24.40	22.10	22.70	30.80
+GCC	19	25.60	20.50	24.70	29.20
+GCC	20	25.80	19.60	22.00	32.60
+GCC	21	23.20	22.90	23.00	30.90
+GCC	22	23.90	22.70	22.60	30.80
+GCC	23	25.80	21.30	22.40	30.50
+GCC	24	23.50	22.00	22.70	31.80
+GCC	25	22.40	21.80	23.10	32.70
+GCC	26	22.90	19.90	24.30	32.90
+GCC	27	23.10	22.10	24.20	30.60
+GCC	28	23.50	22.10	22.90	31.50
+GCC	29	24.40	21.80	21.30	32.50
+GCC	30	21.90	22.50	22.60	33.00
+GCC	31	23.10	20.90	24.20	31.80
+GCC	32	24.60	22.10	23.60	29.70
+GCC	33	22.80	21.10	22.00	34.10
+GCC	34	21.70	22.10	23.60	32.60
+GCC	35	24.30	23.20	20.60	31.90
+GCC	36	21.60	22.70	24.50	31.20
+GCC	37	22.20	23.50	22.20	32.10
+GCC	38	24.10	20.80	22.00	33.10
+GCC	39	22.20	21.10	26.80	29.90
+GCC	40	21.80	24.00	22.90	31.30
+GCC	41	25.10	22.90	23.10	28.90
+GCC	42	25.50	22.70	22.20	29.60
+GCC	43	22.60	23.00	24.10	30.30
+GCC	44	21.70	21.60	24.20	32.50
+GCC	45	21.80	22.70	21.20	34.30
+GCC	46	22.80	22.00	23.80	31.40
+GCC	47	23.70	22.30	23.90	30.10
+GCC	48	24.30	21.70	24.80	29.20
+GCC	49	23.90	22.00	22.90	31.20
+GCC	50	23.50	22.40	22.80	31.30
+GCC	51	23.30	20.40	24.70	31.60
+GCC	52	23.30	20.20	25.10	31.40
+GCC	53	23.70	22.00	22.30	32.00
+GCC	54	23.30	21.30	25.40	30.00
+GCC	55	25.30	21.40	22.60	30.70
+GCC	56	24.40	24.10	19.20	32.30
+GCC	57	22.00	21.50	24.50	32.00
+GCC	58	24.90	21.20	24.20	29.70
+GCC	59	24.10	21.70	24.50	29.70
+GCC	60	24.80	20.90	25.10	29.20
+GCC	61	21.30	21.60	28.10	29.00
+GCC	62	23.80	21.80	21.70	32.70
+GCC	63	23.30	22.80	23.50	30.40
+GCC	64	24.00	21.40	23.50	31.10
+GCC	65	24.40	22.80	22.50	30.30
+GCC	66	24.70	22.30	21.40	31.60
+GCC	67	22.40	21.10	24.60	31.90
+GCC	68	24.60	22.90	20.60	31.90
+GCC	69	22.40	23.00	23.10	31.50
+GCC	70	23.50	19.50	23.90	33.10
+# Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: pairs total, inward oriented pairs, outward oriented pairs, other pairs
+IS	0	0	0	0	0
+IS	1	0	0	0	0
+IS	2	0	0	0	0
+IS	3	0	0	0	0
+IS	4	0	0	0	0
+IS	5	0	0	0	0
+IS	6	0	0	0	0
+IS	7	0	0	0	0
+IS	8	0	0	0	0
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+IS	591	0	0	0	0
+IS	592	0	0	0	0
+IS	593	0	0	0	0
+IS	594	2	2	0	0
+IS	595	0	0	0	0
+IS	596	0	0	0	0
+IS	597	1	1	0	0
+IS	598	0	0	0	0
+IS	599	0	0	0	0
+IS	600	1	1	0	0
+IS	601	1	1	0	0
+IS	602	0	0	0	0
+IS	603	0	0	0	0
+IS	604	0	0	0	0
+IS	605	1	1	0	0
+IS	606	0	0	0	0
+IS	607	1	1	0	0
+IS	608	0	0	0	0
+IS	609	0	0	0	0
+IS	610	0	0	0	0
+IS	611	1	1	0	0
+# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
+RL	70	1000
+# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
+ID	1	0	1
+# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
+IC	8	0	0	1	0
+# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
+COV	[1-1]	1	42
+COV	[2-2]	2	59
+COV	[3-3]	3	73
+COV	[4-4]	4	98
+COV	[5-5]	5	128
+COV	[6-6]	6	142
+COV	[7-7]	7	226
+COV	[8-8]	8	241
+COV	[9-9]	9	281
+COV	[10-10]	10	400
+COV	[11-11]	11	450
+COV	[12-12]	12	444
+COV	[13-13]	13	433
+COV	[14-14]	14	423
+COV	[15-15]	15	392
+COV	[16-16]	16	434
+COV	[17-17]	17	294
+COV	[18-18]	18	229
+COV	[19-19]	19	143
+COV	[20-20]	20	143
+COV	[21-21]	21	149
+COV	[22-22]	22	90
+COV	[23-23]	23	41
+COV	[24-24]	24	14
+# GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile
+GCD	0.0	50.000	0.000	0.000	0.000	0.000	0.000
+GCD	44.0	75.000	14.875	14.875	14.875	14.875	14.875
+GCD	46.0	100.000	11.900	11.900	11.900	11.900	11.900
author	devteam
date	Mon, 20 Oct 2014 14:56:49 -0400
parents
children	cc56fc603e53