diff test-data/samtools_stats_out2/sn.tab @ 1:cc56fc603e53 draft

planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
author devteam
date Tue, 13 Oct 2015 12:56:27 -0400
parents cd6eb75c9819
children
line wrap: on
line diff
--- a/test-data/samtools_stats_out2/sn.tab	Mon Oct 20 14:56:49 2014 -0400
+++ b/test-data/samtools_stats_out2/sn.tab	Tue Oct 13 12:56:27 2015 -0400
@@ -1,31 +1,33 @@
-raw total sequences:	1000
+# Summary Numbers
+
+raw total sequences:	200
 filtered sequences:	0
-sequences:	1000
+sequences:	200
 is sorted:	1
-1st fragments:	500
-last fragments:	500
-reads mapped:	972
-reads mapped and paired:	954	# paired-end technology bit set + both mates mapped
-reads unmapped:	28
+1st fragments:	100
+last fragments:	100
+reads mapped:	25
+reads mapped and paired:	0	# paired-end technology bit set + both mates mapped
+reads unmapped:	175
 reads properly paired:	0	# proper-pair bit set
-reads paired:	1000	# paired-end technology bit set
+reads paired:	200	# paired-end technology bit set
 reads duplicated:	0	# PCR or optical duplicate bit set
-reads MQ0:	0	# mapped and MQ=0
+reads MQ0:	6	# mapped and MQ=0
 reads QC failed:	0
 non-primary alignments:	0
-total length:	70000	# ignores clipping
-bases mapped:	68040	# ignores clipping
-bases mapped (cigar):	68040	# more accurate
+total length:	50200	# ignores clipping
+bases mapped:	6275	# ignores clipping
+bases mapped (cigar):	6275	# more accurate
 bases trimmed:	0
 bases duplicated:	0
-mismatches:	1237	# from NM fields
-error rate:	1.818048e-02	# mismatches / bases mapped (cigar)
-average length:	70
-maximum length:	70
-average quality:	17.0
-insert size average:	495.1
-insert size standard deviation:	48.9
-inward oriented pairs:	477
+mismatches:	591	# from NM fields
+error rate:	9.418327e-02	# mismatches / bases mapped (cigar)
+average length:	251
+maximum length:	251
+average quality:	34.7
+insert size average:	0.0
+insert size standard deviation:	0.0
+inward oriented pairs:	0
 outward oriented pairs:	0
 pairs with other orientation:	0
 pairs on different chromosomes:	0