Mercurial > repos > devteam > samtools_stats

diff samtools_stats.xml @ 10:263d3afea923 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit c5ded4208dd70e88596ddc725795a2401773f02d"
author iuc
date Sat, 27 Nov 2021 12:29:38 +0000
parents ab75c7ea49a5
children a95f78faca04
line wrap: on
line diff
--- a/samtools_stats.xml	Tue Sep 28 16:08:22 2021 +0000
+++ b/samtools_stats.xml	Sat Nov 27 12:29:38 2021 +0000
@@ -42,8 +42,8 @@
                 --trim-quality ${trim_quality}
             #end if
 
-            #if $reffa != None:
-                --ref-seq '$reffa'
+            #if $use_ref:
+                --ref-seq "\$reffa"
             #end if
             ## TODO currently not implemented in Galaxy
             ## generates STR_VALUE.bamstat where STR is given by -P and VALUE is a value of the TAG given by -S