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comparison test-data/12.2reads.overlap.expected @ 12:8fecc86e574a draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit 9c5a35ce695c3d134e41d8695487edd5f71ea33c
author iuc
date Sun, 08 Sep 2024 03:23:56 +0000
parents ab75c7ea49a5
children
comparison
equal deleted inserted replaced
11:a95f78faca04 12:8fecc86e574a
1 # This file was produced by samtools stats (1.12+htslib-1.12) and can be plotted using plot-bamstats 1 # This file was produced by samtools stats (1.20+htslib-1.20) and can be plotted using plot-bamstats
2 # This file contains statistics for all reads. 2 # This file contains statistics for all reads.
3 # The command line was: stats -t /tmp/tmp0r5zs075/files/2/a/2/dataset_2a2a3ee9-3133-4880-a37c-50b6354c9000.dat -@ 0 infile 3 # The command line was: stats -t /tmp/tmp5q_kwqc0/files/4/0/f/dataset_40fb1106-2fe0-491f-8790-2139e9b1b3bd.dat -@ 0 infile
4 # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities 4 # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities
5 # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow) 5 # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
6 CHK 5b31676a b0edee94 471895da 6 CHK 5b31676a b0edee94 471895da
7 # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part. 7 # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
8 SN raw total sequences: 2 # excluding supplementary and secondary reads 8 SN raw total sequences: 2 # excluding supplementary and secondary reads
853 RL 100 2 853 RL 100 2
854 # Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count 854 # Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
855 FRL 100 1 855 FRL 100 1
856 # Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count 856 # Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
857 LRL 100 1 857 LRL 100 1
858 # Mapping qualities for reads !(UNMAP|SECOND|SUPPL|QCFAIL|DUP). Use `grep ^MAPQ | cut -f 2-` to extract this part. The columns are: mapq, count
859 MAPQ 7 1
860 MAPQ 37 1
858 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions 861 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
859 ID 2 0 1 862 ID 2 0 1
860 ID 3 1 0 863 ID 3 1 0
861 # Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev) 864 # Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
862 IC 90 1 0 0 0 865 IC 90 1 0 0 0