Mercurial > repos > devteam > samtools_stats

comparison test-data/samtools_stats_out1__sn.tab @ 9:ab75c7ea49a5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
author iuc
date Tue, 28 Sep 2021 16:08:22 +0000
parents 8d500e0e0dbe
children
comparison
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8:df598009c821 9:ab75c7ea49a5
1 # Summary Numbers. 1 # Summary Numbers.
2 raw total sequences: 200 2 raw total sequences: 200 # excluding supplementary and secondary reads
3 filtered sequences: 0 3 filtered sequences: 0
4 sequences: 200 4 sequences: 200
5 is sorted: 1 5 is sorted: 1
6 1st fragments: 100 6 1st fragments: 100
7 last fragments: 100 7 last fragments: 100
12 reads paired: 200 # paired-end technology bit set 12 reads paired: 200 # paired-end technology bit set
13 reads duplicated: 0 # PCR or optical duplicate bit set 13 reads duplicated: 0 # PCR or optical duplicate bit set
14 reads MQ0: 6 # mapped and MQ=0 14 reads MQ0: 6 # mapped and MQ=0
15 reads QC failed: 0 15 reads QC failed: 0
16 non-primary alignments: 0 16 non-primary alignments: 0
17 supplementary alignments: 0
17 total length: 50200 # ignores clipping 18 total length: 50200 # ignores clipping
18 total first fragment length: 25100 # ignores clipping 19 total first fragment length: 25100 # ignores clipping
19 total last fragment length: 25100 # ignores clipping 20 total last fragment length: 25100 # ignores clipping
20 bases mapped: 6275 # ignores clipping 21 bases mapped: 6275 # ignores clipping
21 bases mapped (cigar): 6275 # more accurate 22 bases mapped (cigar): 6275 # more accurate