Mercurial > repos > devteam > samtools_sort
comparison test-data/1_sort.bam @ 0:4cafbe1d2ea6
initial commit
| author | martenson <cech.marten@gmail.com> |
|---|---|
| date | Wed, 10 Sep 2014 23:06:15 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:4cafbe1d2ea6 |
|---|---|
| 1 | |
| 2 | |
| 3 | |
| 4 | |
| 5 <!DOCTYPE html> | |
| 6 <html lang="en" class=""> | |
| 7 <head prefix="og: http://ogp.me/ns# fb: http://ogp.me/ns/fb# object: http://ogp.me/ns/object# article: http://ogp.me/ns/article# profile: http://ogp.me/ns/profile#"> | |
| 8 <meta charset='utf-8'> | |
| 9 <meta http-equiv="X-UA-Compatible" content="IE=edge"> | |
| 10 <meta http-equiv="Content-Language" content="en"> | |
| 11 | |
| 12 | |
| 13 <title>galaxytools/1_sort.bam at master ยท bgruening/galaxytools</title> | |
| 14 <link rel="search" type="application/opensearchdescription+xml" href="/opensearch.xml" title="GitHub"> | |
| 15 <link rel="fluid-icon" href="https://github.com/fluidicon.png" title="GitHub"> | |
| 16 <link rel="apple-touch-icon" sizes="57x57" href="/apple-touch-icon-114.png"> | |
| 17 <link rel="apple-touch-icon" sizes="114x114" href="/apple-touch-icon-114.png"> | |
| 18 <link rel="apple-touch-icon" sizes="72x72" href="/apple-touch-icon-144.png"> | |
| 19 <link rel="apple-touch-icon" sizes="144x144" href="/apple-touch-icon-144.png"> | |
| 20 <meta property="fb:app_id" content="1401488693436528"> | |
| 21 | |
| 22 <meta content="@github" name="twitter:site" /><meta content="summary" name="twitter:card" /><meta content="bgruening/galaxytools" name="twitter:title" /><meta content="galaxytools - Galaxy Tool wrappers" name="twitter:description" /><meta content="https://avatars0.githubusercontent.com/u/469983?v=2&s=400" name="twitter:image:src" /> | |
| 23 <meta content="GitHub" property="og:site_name" /><meta content="object" property="og:type" /><meta content="https://avatars0.githubusercontent.com/u/469983?v=2&s=400" property="og:image" /><meta content="bgruening/galaxytools" property="og:title" /><meta content="https://github.com/bgruening/galaxytools" property="og:url" /><meta content="galaxytools - Galaxy Tool wrappers" property="og:description" /> | |
| 24 | |
| 25 <meta name="browser-stats-url" content="/_stats"> | |
| 26 <link rel="assets" href="https://assets-cdn.github.com/"> | |
| 27 <link rel="conduit-xhr" href="https://ghconduit.com:25035"> | |
| 28 <link rel="xhr-socket" href="/_sockets"> | |
| 29 | |
| 30 <meta name="msapplication-TileImage" content="/windows-tile.png"> | |
| 31 <meta name="msapplication-TileColor" content="#ffffff"> | |
| 32 <meta name="selected-link" value="repo_source" data-pjax-transient> | |
| 33 <meta name="google-analytics" content="UA-3769691-2"> | |
| 34 | |
| 35 <meta content="collector.githubapp.com" name="octolytics-host" /><meta content="collector-cdn.github.com" name="octolytics-script-host" /><meta content="github" name="octolytics-app-id" /><meta content="473A4A01:275A:168FDCA:54111164" name="octolytics-dimension-request_id" /><meta content="1814954" name="octolytics-actor-id" /><meta content="martenson" name="octolytics-actor-login" /><meta content="dde9ac06cabe96d1758902d5ea67b8d45f8cc402318d8a310a5cb1697f328405" name="octolytics-actor-hash" /> | |
| 36 <meta content="Rails, view, blob#show" name="analytics-event" /> | |
| 37 | |
| 38 | |
| 39 | |
| 40 <link rel="icon" type="image/x-icon" href="https://assets-cdn.github.com/favicon.ico"> | |
| 41 | |
| 42 | |
| 43 <meta content="authenticity_token" name="csrf-param" /> | |
| 44 <meta content="NhqkPNf69u/KM31dJaKbEWU3p41xdaMu2KODrSIrOJGk3ckm3SccUIsfFR21kXgh13QxqEHkrZTTx4X9lO7pmQ==" name="csrf-token" /> | |
| 45 | |
| 46 <link href="https://assets-cdn.github.com/assets/github-e98a2e283e3419aa85768affc5929842870bc5fc.css" media="all" rel="stylesheet" type="text/css" /> | |
| 47 <link href="https://assets-cdn.github.com/assets/github2-c63e67d784fa7ee064d9610f2d22cdf8d0d7f467.css" media="all" rel="stylesheet" type="text/css" /> | |
| 48 | |
| 49 | |
| 50 | |
| 51 <meta http-equiv="x-pjax-version" content="37f365d9c8bc52a9b54820d2549e77db"> | |
| 52 | |
| 53 | |
| 54 <meta name="description" content="galaxytools - Galaxy Tool wrappers"> | |
| 55 <meta name="go-import" content="github.com/bgruening/galaxytools git https://github.com/bgruening/galaxytools.git"> | |
| 56 | |
| 57 <meta content="469983" name="octolytics-dimension-user_id" /><meta content="bgruening" name="octolytics-dimension-user_login" /><meta content="6942323" name="octolytics-dimension-repository_id" /><meta content="bgruening/galaxytools" name="octolytics-dimension-repository_nwo" /><meta content="true" name="octolytics-dimension-repository_public" /><meta content="false" name="octolytics-dimension-repository_is_fork" /><meta content="6942323" name="octolytics-dimension-repository_network_root_id" /><meta content="bgruening/galaxytools" name="octolytics-dimension-repository_network_root_nwo" /> | |
| 58 <link href="https://github.com/bgruening/galaxytools/commits/master.atom" rel="alternate" title="Recent Commits to galaxytools:master" type="application/atom+xml"> | |
| 59 | |
| 60 </head> | |
| 61 | |
| 62 | |
| 63 <body class="logged_in env-production macintosh vis-public page-blob"> | |
| 64 <a href="#start-of-content" tabindex="1" class="accessibility-aid js-skip-to-content">Skip to content</a> | |
| 65 <div class="wrapper"> | |
| 66 | |
| 67 | |
| 68 | |
| 69 | |
| 70 | |
| 71 | |
| 72 <div class="header header-logged-in true"> | |
| 73 <div class="container clearfix"> | |
| 74 | |
| 75 <a class="header-logo-invertocat" href="https://github.com/" aria-label="Homepage" ga-data-click="Header, go to dashboard, icon:logo"> | |
| 76 <span class="mega-octicon octicon-mark-github"></span> | |
| 77 </a> | |
| 78 | |
| 79 | |
| 80 <div class="site-search repo-scope js-site-search"> | |
| 81 <form accept-charset="UTF-8" action="/bgruening/galaxytools/search" class="js-site-search-form" data-global-search-url="/search" data-repo-search-url="/bgruening/galaxytools/search" method="get"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /></div> | |
| 82 <input type="text" | |
| 83 class="js-site-search-field is-clearable" | |
| 84 data-hotkey="s" | |
| 85 name="q" | |
| 86 placeholder="Search" | |
| 87 data-global-scope-placeholder="Search GitHub" | |
| 88 data-repo-scope-placeholder="Search" | |
| 89 tabindex="1" | |
| 90 autocapitalize="off"> | |
| 91 <div class="scope-badge">This repository</div> | |
| 92 </form> | |
| 93 </div> | |
| 94 <ul class="header-nav left"> | |
| 95 <li class="header-nav-item explore"> | |
| 96 <a class="header-nav-link" href="/explore" data-ga-click="Header, go to explore, text:explore">Explore</a> | |
| 97 </li> | |
| 98 <li class="header-nav-item"> | |
| 99 <a class="header-nav-link" href="https://gist.github.com" data-ga-click="Header, go to gist, text:gist">Gist</a> | |
| 100 </li> | |
| 101 <li class="header-nav-item"> | |
| 102 <a class="header-nav-link" href="/blog" data-ga-click="Header, go to blog, text:blog">Blog</a> | |
| 103 </li> | |
| 104 <li class="header-nav-item"> | |
| 105 <a class="header-nav-link" href="https://help.github.com" data-ga-click="Header, go to help, text:help">Help</a> | |
| 106 </li> | |
| 107 </ul> | |
| 108 | |
| 109 | |
| 110 <ul class="header-nav user-nav right" id="user-links"> | |
| 111 <li class="header-nav-item dropdown js-menu-container"> | |
| 112 <a class="header-nav-link name" href="/martenson" data-ga-click="Header, go to profile, text:username"> | |
| 113 <img alt="Marten" class="avatar" data-user="1814954" height="20" src="https://avatars1.githubusercontent.com/u/1814954?v=2&s=40" width="20" /> | |
| 114 <span class="css-truncate"> | |
| 115 <span class="css-truncate-target">martenson</span> | |
| 116 </span> | |
| 117 </a> | |
| 118 </li> | |
| 119 | |
| 120 <li class="header-nav-item dropdown js-menu-container"> | |
| 121 <a class="header-nav-link js-menu-target tooltipped tooltipped-s" href="#" aria-label="Create new..." data-ga-click="Header, create new, icon:add"> | |
| 122 <span class="octicon octicon-plus"></span> | |
| 123 <span class="dropdown-caret"></span> | |
| 124 </a> | |
| 125 | |
| 126 <div class="dropdown-menu-content js-menu-content"> | |
| 127 | |
| 128 <ul class="dropdown-menu"> | |
| 129 <li> | |
| 130 <a href="/new"><span class="octicon octicon-repo"></span> New repository</a> | |
| 131 </li> | |
| 132 <li> | |
| 133 <a href="/organizations/new"><span class="octicon octicon-organization"></span> New organization</a> | |
| 134 </li> | |
| 135 | |
| 136 | |
| 137 <li class="dropdown-divider"></li> | |
| 138 <li class="dropdown-header"> | |
| 139 <span title="bgruening/galaxytools">This repository</span> | |
| 140 </li> | |
| 141 <li> | |
| 142 <a href="/bgruening/galaxytools/issues/new"><span class="octicon octicon-issue-opened"></span> New issue</a> | |
| 143 </li> | |
| 144 </ul> | |
| 145 | |
| 146 </div> | |
| 147 </li> | |
| 148 | |
| 149 <li class="header-nav-item"> | |
| 150 <a href="/notifications" aria-label="You have no unread notifications" class="header-nav-link notification-indicator tooltipped tooltipped-s" data-ga-click="Header, go to notifications, icon:read" data-hotkey="g n"> | |
| 151 <span class="mail-status all-read"></span> | |
| 152 <span class="octicon octicon-inbox"></span> | |
| 153 </a> | |
| 154 </li> | |
| 155 | |
| 156 <li class="header-nav-item"> | |
| 157 <a class="header-nav-link tooltipped tooltipped-s" href="/settings/profile" id="account_settings" aria-label="Settings" data-ga-click="Header, go to settings, icon:settings"> | |
| 158 <span class="octicon octicon-gear"></span> | |
| 159 </a> | |
| 160 </li> | |
| 161 | |
| 162 <li class="header-nav-item"> | |
| 163 <form accept-charset="UTF-8" action="/logout" class="logout-form" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /><input name="authenticity_token" type="hidden" value="L6BP5W4W9Z+oJeRBcH4vBF3A1QdSZ2FID2NdYb7Wv4/3uBRrqGGI4z2ZIv7hZvgYtsEWptUgykl1uaM3yIXqUg==" /></div> | |
| 164 <button class="header-nav-link sign-out-button tooltipped tooltipped-s" aria-label="Sign out" data-ga-click="Header, sign out, icon:logout"> | |
| 165 <span class="octicon octicon-sign-out"></span> | |
| 166 </button> | |
| 167 </form> </li> | |
| 168 | |
| 169 </ul> | |
| 170 | |
| 171 | |
| 172 | |
| 173 </div> | |
| 174 </div> | |
| 175 | |
| 176 | |
| 177 | |
| 178 | |
| 179 | |
| 180 | |
| 181 <div id="start-of-content" class="accessibility-aid"></div> | |
| 182 <div class="site" itemscope itemtype="http://schema.org/WebPage"> | |
| 183 <div id="js-flash-container"> | |
| 184 | |
| 185 </div> | |
| 186 <div class="pagehead repohead instapaper_ignore readability-menu"> | |
| 187 <div class="container"> | |
| 188 | |
| 189 <ul class="pagehead-actions"> | |
| 190 | |
| 191 <li class="subscription"> | |
| 192 <form accept-charset="UTF-8" action="/notifications/subscribe" class="js-social-container" data-autosubmit="true" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /><input name="authenticity_token" type="hidden" value="FHVcBANTJmtM5NnuPUxYkTcwD96IkHBEc5mz5H7fQsNWymspTCZPw3mP5/oxTaKQW/foviyUeRr2Rd+/A5TMIw==" /></div> <input id="repository_id" name="repository_id" type="hidden" value="6942323" /> | |
| 193 | |
| 194 <div class="select-menu js-menu-container js-select-menu"> | |
| 195 <a class="social-count js-social-count" href="/bgruening/galaxytools/watchers"> | |
| 196 18 | |
| 197 </a> | |
| 198 <a href="/bgruening/galaxytools/subscription" | |
| 199 class="minibutton select-menu-button with-count js-menu-target" role="button" tabindex="0" aria-haspopup="true"> | |
| 200 <span class="js-select-button"> | |
| 201 <span class="octicon octicon-eye"></span> | |
| 202 Watch | |
| 203 </span> | |
| 204 </a> | |
| 205 | |
| 206 <div class="select-menu-modal-holder"> | |
| 207 <div class="select-menu-modal subscription-menu-modal js-menu-content" aria-hidden="true"> | |
| 208 <div class="select-menu-header"> | |
| 209 <span class="select-menu-title">Notifications</span> | |
| 210 <span class="octicon octicon-x js-menu-close" role="button" aria-label="Close"></span> | |
| 211 </div> <!-- /.select-menu-header --> | |
| 212 | |
| 213 <div class="select-menu-list js-navigation-container" role="menu"> | |
| 214 | |
| 215 <div class="select-menu-item js-navigation-item selected" role="menuitem" tabindex="0"> | |
| 216 <span class="select-menu-item-icon octicon octicon-check"></span> | |
| 217 <div class="select-menu-item-text"> | |
| 218 <input checked="checked" id="do_included" name="do" type="radio" value="included" /> | |
| 219 <h4>Not watching</h4> | |
| 220 <span class="description">Be notified when participating or @mentioned.</span> | |
| 221 <span class="js-select-button-text hidden-select-button-text"> | |
| 222 <span class="octicon octicon-eye"></span> | |
| 223 Watch | |
| 224 </span> | |
| 225 </div> | |
| 226 </div> <!-- /.select-menu-item --> | |
| 227 | |
| 228 <div class="select-menu-item js-navigation-item " role="menuitem" tabindex="0"> | |
| 229 <span class="select-menu-item-icon octicon octicon octicon-check"></span> | |
| 230 <div class="select-menu-item-text"> | |
| 231 <input id="do_subscribed" name="do" type="radio" value="subscribed" /> | |
| 232 <h4>Watching</h4> | |
| 233 <span class="description">Be notified of all conversations.</span> | |
| 234 <span class="js-select-button-text hidden-select-button-text"> | |
| 235 <span class="octicon octicon-eye"></span> | |
| 236 Unwatch | |
| 237 </span> | |
| 238 </div> | |
| 239 </div> <!-- /.select-menu-item --> | |
| 240 | |
| 241 <div class="select-menu-item js-navigation-item " role="menuitem" tabindex="0"> | |
| 242 <span class="select-menu-item-icon octicon octicon-check"></span> | |
| 243 <div class="select-menu-item-text"> | |
| 244 <input id="do_ignore" name="do" type="radio" value="ignore" /> | |
| 245 <h4>Ignoring</h4> | |
| 246 <span class="description">Never be notified.</span> | |
| 247 <span class="js-select-button-text hidden-select-button-text"> | |
| 248 <span class="octicon octicon-mute"></span> | |
| 249 Stop ignoring | |
| 250 </span> | |
| 251 </div> | |
| 252 </div> <!-- /.select-menu-item --> | |
| 253 | |
| 254 </div> <!-- /.select-menu-list --> | |
| 255 | |
| 256 </div> <!-- /.select-menu-modal --> | |
| 257 </div> <!-- /.select-menu-modal-holder --> | |
| 258 </div> <!-- /.select-menu --> | |
| 259 | |
| 260 </form> | |
| 261 </li> | |
| 262 | |
| 263 <li> | |
| 264 | |
| 265 <div class="js-toggler-container js-social-container starring-container on"> | |
| 266 | |
| 267 <form accept-charset="UTF-8" action="/bgruening/galaxytools/unstar" class="js-toggler-form starred js-unstar-button" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /><input name="authenticity_token" type="hidden" value="Vy7np1X5m4sPSnkZoaY0N1rtbrCOuk7kQyn6IvIYX4JY6RhqZeijiQ7bsQj0wJmKQT+0NzU7WxM/GOUstOip1g==" /></div> | |
| 268 <button | |
| 269 class="minibutton with-count js-toggler-target star-button" | |
| 270 aria-label="Unstar this repository" title="Unstar bgruening/galaxytools"> | |
| 271 <span class="octicon octicon-star"></span> | |
| 272 Unstar | |
| 273 </button> | |
| 274 <a class="social-count js-social-count" href="/bgruening/galaxytools/stargazers"> | |
| 275 20 | |
| 276 </a> | |
| 277 </form> | |
| 278 <form accept-charset="UTF-8" action="/bgruening/galaxytools/star" class="js-toggler-form unstarred js-star-button" data-remote="true" method="post"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /><input name="authenticity_token" type="hidden" value="PhbWFenPrMpMBlgAxX5oz4SjpNIMd5k4jts4kaEQ7xY2m3NCNjLmGBRCMA4OtOoGJKxM3g/+kX52cbINCkrlUQ==" /></div> | |
| 279 <button | |
| 280 class="minibutton with-count js-toggler-target star-button" | |
| 281 aria-label="Star this repository" title="Star bgruening/galaxytools"> | |
| 282 <span class="octicon octicon-star"></span> | |
| 283 Star | |
| 284 </button> | |
| 285 <a class="social-count js-social-count" href="/bgruening/galaxytools/stargazers"> | |
| 286 20 | |
| 287 </a> | |
| 288 </form> </div> | |
| 289 | |
| 290 </li> | |
| 291 | |
| 292 | |
| 293 <li> | |
| 294 <a href="/bgruening/galaxytools/fork" class="minibutton with-count js-toggler-target fork-button tooltipped-n" title="Fork your own copy of bgruening/galaxytools to your account" aria-label="Fork your own copy of bgruening/galaxytools to your account" rel="nofollow" data-method="post"> | |
| 295 <span class="octicon octicon-repo-forked"></span> | |
| 296 Fork | |
| 297 </a> | |
| 298 <a href="/bgruening/galaxytools/network" class="social-count">22</a> | |
| 299 </li> | |
| 300 | |
| 301 </ul> | |
| 302 | |
| 303 <h1 itemscope itemtype="http://data-vocabulary.org/Breadcrumb" class="entry-title public"> | |
| 304 <span class="mega-octicon octicon-repo"></span> | |
| 305 <span class="author"><a href="/bgruening" class="url fn" itemprop="url" rel="author"><span itemprop="title">bgruening</span></a></span><!-- | |
| 306 --><span class="path-divider">/</span><!-- | |
| 307 --><strong><a href="/bgruening/galaxytools" class="js-current-repository js-repo-home-link">galaxytools</a></strong> | |
| 308 | |
| 309 <span class="page-context-loader"> | |
| 310 <img alt="" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" /> | |
| 311 </span> | |
| 312 | |
| 313 </h1> | |
| 314 </div><!-- /.container --> | |
| 315 </div><!-- /.repohead --> | |
| 316 | |
| 317 <div class="container"> | |
| 318 <div class="repository-with-sidebar repo-container new-discussion-timeline "> | |
| 319 <div class="repository-sidebar clearfix"> | |
| 320 | |
| 321 <div class="sunken-menu vertical-right repo-nav js-repo-nav js-repository-container-pjax js-octicon-loaders" data-issue-count-url="/bgruening/galaxytools/issues/counts"> | |
| 322 <div class="sunken-menu-contents"> | |
| 323 <ul class="sunken-menu-group"> | |
| 324 <li class="tooltipped tooltipped-w" aria-label="Code"> | |
| 325 <a href="/bgruening/galaxytools" aria-label="Code" class="selected js-selected-navigation-item sunken-menu-item" data-hotkey="g c" data-pjax="true" data-selected-links="repo_source repo_downloads repo_commits repo_releases repo_tags repo_branches /bgruening/galaxytools"> | |
| 326 <span class="octicon octicon-code"></span> <span class="full-word">Code</span> | |
| 327 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" /> | |
| 328 </a> </li> | |
| 329 | |
| 330 <li class="tooltipped tooltipped-w" aria-label="Issues"> | |
| 331 <a href="/bgruening/galaxytools/issues" aria-label="Issues" class="js-selected-navigation-item sunken-menu-item js-disable-pjax" data-hotkey="g i" data-selected-links="repo_issues repo_labels repo_milestones /bgruening/galaxytools/issues"> | |
| 332 <span class="octicon octicon-issue-opened"></span> <span class="full-word">Issues</span> | |
| 333 <span class="js-issue-replace-counter"></span> | |
| 334 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" /> | |
| 335 </a> </li> | |
| 336 | |
| 337 <li class="tooltipped tooltipped-w" aria-label="Pull Requests"> | |
| 338 <a href="/bgruening/galaxytools/pulls" aria-label="Pull Requests" class="js-selected-navigation-item sunken-menu-item js-disable-pjax" data-hotkey="g p" data-selected-links="repo_pulls /bgruening/galaxytools/pulls"> | |
| 339 <span class="octicon octicon-git-pull-request"></span> <span class="full-word">Pull Requests</span> | |
| 340 <span class="js-pull-replace-counter"></span> | |
| 341 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" /> | |
| 342 </a> </li> | |
| 343 | |
| 344 | |
| 345 <li class="tooltipped tooltipped-w" aria-label="Wiki"> | |
| 346 <a href="/bgruening/galaxytools/wiki" aria-label="Wiki" class="js-selected-navigation-item sunken-menu-item js-disable-pjax" data-hotkey="g w" data-selected-links="repo_wiki /bgruening/galaxytools/wiki"> | |
| 347 <span class="octicon octicon-book"></span> <span class="full-word">Wiki</span> | |
| 348 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" /> | |
| 349 </a> </li> | |
| 350 </ul> | |
| 351 <div class="sunken-menu-separator"></div> | |
| 352 <ul class="sunken-menu-group"> | |
| 353 | |
| 354 <li class="tooltipped tooltipped-w" aria-label="Pulse"> | |
| 355 <a href="/bgruening/galaxytools/pulse/weekly" aria-label="Pulse" class="js-selected-navigation-item sunken-menu-item" data-pjax="true" data-selected-links="pulse /bgruening/galaxytools/pulse/weekly"> | |
| 356 <span class="octicon octicon-pulse"></span> <span class="full-word">Pulse</span> | |
| 357 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" /> | |
| 358 </a> </li> | |
| 359 | |
| 360 <li class="tooltipped tooltipped-w" aria-label="Graphs"> | |
| 361 <a href="/bgruening/galaxytools/graphs" aria-label="Graphs" class="js-selected-navigation-item sunken-menu-item" data-pjax="true" data-selected-links="repo_graphs repo_contributors /bgruening/galaxytools/graphs"> | |
| 362 <span class="octicon octicon-graph"></span> <span class="full-word">Graphs</span> | |
| 363 <img alt="" class="mini-loader" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" /> | |
| 364 </a> </li> | |
| 365 </ul> | |
| 366 | |
| 367 | |
| 368 </div> | |
| 369 </div> | |
| 370 | |
| 371 <div class="only-with-full-nav"> | |
| 372 | |
| 373 | |
| 374 <div class="clone-url open" | |
| 375 data-protocol-type="http" | |
| 376 data-url="/users/set_protocol?protocol_selector=http&protocol_type=clone"> | |
| 377 <h3><span class="text-emphasized">HTTPS</span> clone URL</h3> | |
| 378 <div class="input-group"> | |
| 379 <input type="text" class="input-mini input-monospace js-url-field" | |
| 380 value="https://github.com/bgruening/galaxytools.git" readonly="readonly"> | |
| 381 <span class="input-group-button"> | |
| 382 <button aria-label="Copy to clipboard" class="js-zeroclipboard minibutton zeroclipboard-button" data-clipboard-text="https://github.com/bgruening/galaxytools.git" data-copied-hint="Copied!" type="button"><span class="octicon octicon-clippy"></span></button> | |
| 383 </span> | |
| 384 </div> | |
| 385 </div> | |
| 386 | |
| 387 | |
| 388 <div class="clone-url " | |
| 389 data-protocol-type="ssh" | |
| 390 data-url="/users/set_protocol?protocol_selector=ssh&protocol_type=clone"> | |
| 391 <h3><span class="text-emphasized">SSH</span> clone URL</h3> | |
| 392 <div class="input-group"> | |
| 393 <input type="text" class="input-mini input-monospace js-url-field" | |
| 394 value="git@github.com:bgruening/galaxytools.git" readonly="readonly"> | |
| 395 <span class="input-group-button"> | |
| 396 <button aria-label="Copy to clipboard" class="js-zeroclipboard minibutton zeroclipboard-button" data-clipboard-text="git@github.com:bgruening/galaxytools.git" data-copied-hint="Copied!" type="button"><span class="octicon octicon-clippy"></span></button> | |
| 397 </span> | |
| 398 </div> | |
| 399 </div> | |
| 400 | |
| 401 | |
| 402 <div class="clone-url " | |
| 403 data-protocol-type="subversion" | |
| 404 data-url="/users/set_protocol?protocol_selector=subversion&protocol_type=clone"> | |
| 405 <h3><span class="text-emphasized">Subversion</span> checkout URL</h3> | |
| 406 <div class="input-group"> | |
| 407 <input type="text" class="input-mini input-monospace js-url-field" | |
| 408 value="https://github.com/bgruening/galaxytools" readonly="readonly"> | |
| 409 <span class="input-group-button"> | |
| 410 <button aria-label="Copy to clipboard" class="js-zeroclipboard minibutton zeroclipboard-button" data-clipboard-text="https://github.com/bgruening/galaxytools" data-copied-hint="Copied!" type="button"><span class="octicon octicon-clippy"></span></button> | |
| 411 </span> | |
| 412 </div> | |
| 413 </div> | |
| 414 | |
| 415 | |
| 416 <p class="clone-options">You can clone with | |
| 417 <a href="#" class="js-clone-selector" data-protocol="http">HTTPS</a>, | |
| 418 <a href="#" class="js-clone-selector" data-protocol="ssh">SSH</a>, | |
| 419 or <a href="#" class="js-clone-selector" data-protocol="subversion">Subversion</a>. | |
| 420 <a href="https://help.github.com/articles/which-remote-url-should-i-use" class="help tooltipped tooltipped-n" aria-label="Get help on which URL is right for you."> | |
| 421 <span class="octicon octicon-question"></span> | |
| 422 </a> | |
| 423 </p> | |
| 424 | |
| 425 <a href="http://mac.github.com" data-url="github-mac://openRepo/https://github.com/bgruening/galaxytools" class="minibutton sidebar-button js-conduit-rewrite-url" title="Save bgruening/galaxytools to your computer and use it in GitHub Desktop." aria-label="Save bgruening/galaxytools to your computer and use it in GitHub Desktop."> | |
| 426 <span class="octicon octicon-device-desktop"></span> | |
| 427 Clone in Desktop | |
| 428 </a> | |
| 429 | |
| 430 | |
| 431 <a href="/bgruening/galaxytools/archive/master.zip" | |
| 432 class="minibutton sidebar-button" | |
| 433 aria-label="Download the contents of bgruening/galaxytools as a zip file" | |
| 434 title="Download the contents of bgruening/galaxytools as a zip file" | |
| 435 rel="nofollow"> | |
| 436 <span class="octicon octicon-cloud-download"></span> | |
| 437 Download ZIP | |
| 438 </a> | |
| 439 </div> | |
| 440 </div><!-- /.repository-sidebar --> | |
| 441 | |
| 442 <div id="js-repo-pjax-container" class="repository-content context-loader-container" data-pjax-container> | |
| 443 | |
| 444 | |
| 445 <a href="/bgruening/galaxytools/blob/3a57ada6062aa513010b1bc15048135d4207f337/samtools_sort/test-data/1_sort.bam" class="hidden js-permalink-shortcut" data-hotkey="y">Permalink</a> | |
| 446 | |
| 447 <!-- blob contrib key: blob_contributors:v21:f122cca0ab5757362bdf76ee45b75705 --> | |
| 448 | |
| 449 <div class="file-navigation"> | |
| 450 | |
| 451 <div class="select-menu js-menu-container js-select-menu left"> | |
| 452 <span class="minibutton select-menu-button js-menu-target css-truncate" data-hotkey="w" | |
| 453 data-master-branch="master" | |
| 454 data-ref="master" | |
| 455 title="master" | |
| 456 role="button" aria-label="Switch branches or tags" tabindex="0" aria-haspopup="true"> | |
| 457 <span class="octicon octicon-git-branch"></span> | |
| 458 <i>branch:</i> | |
| 459 <span class="js-select-button css-truncate-target">master</span> | |
| 460 </span> | |
| 461 | |
| 462 <div class="select-menu-modal-holder js-menu-content js-navigation-container" data-pjax aria-hidden="true"> | |
| 463 | |
| 464 <div class="select-menu-modal"> | |
| 465 <div class="select-menu-header"> | |
| 466 <span class="select-menu-title">Switch branches/tags</span> | |
| 467 <span class="octicon octicon-x js-menu-close" role="button" aria-label="Close"></span> | |
| 468 </div> <!-- /.select-menu-header --> | |
| 469 | |
| 470 <div class="select-menu-filters"> | |
| 471 <div class="select-menu-text-filter"> | |
| 472 <input type="text" aria-label="Filter branches/tags" id="context-commitish-filter-field" class="js-filterable-field js-navigation-enable" placeholder="Filter branches/tags"> | |
| 473 </div> | |
| 474 <div class="select-menu-tabs"> | |
| 475 <ul> | |
| 476 <li class="select-menu-tab"> | |
| 477 <a href="#" data-tab-filter="branches" class="js-select-menu-tab">Branches</a> | |
| 478 </li> | |
| 479 <li class="select-menu-tab"> | |
| 480 <a href="#" data-tab-filter="tags" class="js-select-menu-tab">Tags</a> | |
| 481 </li> | |
| 482 </ul> | |
| 483 </div><!-- /.select-menu-tabs --> | |
| 484 </div><!-- /.select-menu-filters --> | |
| 485 | |
| 486 <div class="select-menu-list select-menu-tab-bucket js-select-menu-tab-bucket" data-tab-filter="branches"> | |
| 487 | |
| 488 <div data-filterable-for="context-commitish-filter-field" data-filterable-type="substring"> | |
| 489 | |
| 490 | |
| 491 <div class="select-menu-item js-navigation-item "> | |
| 492 <span class="select-menu-item-icon octicon octicon-check"></span> | |
| 493 <a href="/bgruening/galaxytools/blob/gh-pages/samtools_sort/test-data/1_sort.bam" | |
| 494 data-name="gh-pages" | |
| 495 data-skip-pjax="true" | |
| 496 rel="nofollow" | |
| 497 class="js-navigation-open select-menu-item-text css-truncate-target" | |
| 498 title="gh-pages">gh-pages</a> | |
| 499 </div> <!-- /.select-menu-item --> | |
| 500 <div class="select-menu-item js-navigation-item selected"> | |
| 501 <span class="select-menu-item-icon octicon octicon-check"></span> | |
| 502 <a href="/bgruening/galaxytools/blob/master/samtools_sort/test-data/1_sort.bam" | |
| 503 data-name="master" | |
| 504 data-skip-pjax="true" | |
| 505 rel="nofollow" | |
| 506 class="js-navigation-open select-menu-item-text css-truncate-target" | |
| 507 title="master">master</a> | |
| 508 </div> <!-- /.select-menu-item --> | |
| 509 </div> | |
| 510 | |
| 511 <div class="select-menu-no-results">Nothing to show</div> | |
| 512 </div> <!-- /.select-menu-list --> | |
| 513 | |
| 514 <div class="select-menu-list select-menu-tab-bucket js-select-menu-tab-bucket" data-tab-filter="tags"> | |
| 515 <div data-filterable-for="context-commitish-filter-field" data-filterable-type="substring"> | |
| 516 | |
| 517 | |
| 518 </div> | |
| 519 | |
| 520 <div class="select-menu-no-results">Nothing to show</div> | |
| 521 </div> <!-- /.select-menu-list --> | |
| 522 | |
| 523 </div> <!-- /.select-menu-modal --> | |
| 524 </div> <!-- /.select-menu-modal-holder --> | |
| 525 </div> <!-- /.select-menu --> | |
| 526 | |
| 527 <div class="button-group right"> | |
| 528 <a href="/bgruening/galaxytools/find/master" | |
| 529 class="js-show-file-finder minibutton empty-icon tooltipped tooltipped-s" | |
| 530 data-pjax | |
| 531 data-hotkey="t" | |
| 532 aria-label="Quickly jump between files"> | |
| 533 <span class="octicon octicon-list-unordered"></span> | |
| 534 </a> | |
| 535 <button class="js-zeroclipboard minibutton zeroclipboard-button" | |
| 536 data-clipboard-text="samtools_sort/test-data/1_sort.bam" | |
| 537 aria-label="Copy to clipboard" | |
| 538 data-copied-hint="Copied!"> | |
| 539 <span class="octicon octicon-clippy"></span> | |
| 540 </button> | |
| 541 </div> | |
| 542 | |
| 543 <div class="breadcrumb"> | |
| 544 <span class='repo-root js-repo-root'><span itemscope="" itemtype="http://data-vocabulary.org/Breadcrumb"><a href="/bgruening/galaxytools" class="" data-branch="master" data-direction="back" data-pjax="true" itemscope="url"><span itemprop="title">galaxytools</span></a></span></span><span class="separator"> / </span><span itemscope="" itemtype="http://data-vocabulary.org/Breadcrumb"><a href="/bgruening/galaxytools/tree/master/samtools_sort" class="" data-branch="master" data-direction="back" data-pjax="true" itemscope="url"><span itemprop="title">samtools_sort</span></a></span><span class="separator"> / </span><span itemscope="" itemtype="http://data-vocabulary.org/Breadcrumb"><a href="/bgruening/galaxytools/tree/master/samtools_sort/test-data" class="" data-branch="master" data-direction="back" data-pjax="true" itemscope="url"><span itemprop="title">test-data</span></a></span><span class="separator"> / </span><strong class="final-path">1_sort.bam</strong> | |
| 545 </div> | |
| 546 </div> | |
| 547 | |
| 548 | |
| 549 <div class="commit commit-loader file-history-tease js-deferred-content" data-url="/bgruening/galaxytools/contributors/master/samtools_sort/test-data/1_sort.bam"> | |
| 550 <div class="file-history-tease-header"> | |
| 551 Fetching contributors… | |
| 552 </div> | |
| 553 | |
| 554 <div class="participation"> | |
| 555 <p class="loader-loading"><img alt="" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32-EAF2F5.gif" width="16" /></p> | |
| 556 <p class="loader-error">Cannot retrieve contributors at this time</p> | |
| 557 </div> | |
| 558 </div> | |
| 559 | |
| 560 <div class="file-box"> | |
| 561 <div class="file"> | |
| 562 <div class="meta clearfix"> | |
| 563 <div class="info file-name"> | |
| 564 <span>3.491 kb</span> | |
| 565 </div> | |
| 566 <div class="actions"> | |
| 567 <div class="button-group"> | |
| 568 <a href="/bgruening/galaxytools/raw/master/samtools_sort/test-data/1_sort.bam" class="minibutton " id="raw-url">Raw</a> | |
| 569 <a href="/bgruening/galaxytools/commits/master/samtools_sort/test-data/1_sort.bam" class="minibutton " rel="nofollow">History</a> | |
| 570 </div><!-- /.button-group --> | |
| 571 | |
| 572 <a class="octicon-button tooltipped tooltipped-nw js-conduit-openfile-check" | |
| 573 href="http://mac.github.com" | |
| 574 data-url="github-mac://openRepo/https://github.com/bgruening/galaxytools?branch=master&filepath=samtools_sort%2Ftest-data%2F1_sort.bam" | |
| 575 aria-label="Open this file in GitHub for Mac" | |
| 576 data-failed-title="Your version of GitHub for Mac is too old to open this file. Try checking for updates."> | |
| 577 <span class="octicon octicon-device-desktop"></span> | |
| 578 </a> | |
| 579 | |
| 580 | |
| 581 <a class="octicon-button danger tooltipped tooltipped-s" | |
| 582 href="/bgruening/galaxytools/delete/master/samtools_sort/test-data/1_sort.bam" | |
| 583 aria-label="Fork this project and delete file" | |
| 584 data-method="post" data-test-id="delete-blob-file" rel="nofollow"> | |
| 585 <span class="octicon octicon-trashcan"></span> | |
| 586 </a> | |
| 587 </div><!-- /.actions --> | |
| 588 </div> | |
| 589 | |
| 590 <div class="blob-wrapper data type-text"> | |
| 591 <div class="image"> | |
| 592 <a href="/bgruening/galaxytools/blob/master/samtools_sort/test-data/1_sort.bam?raw=true">View Raw</a> | |
| 593 </div> | |
| 594 </div> | |
| 595 | |
| 596 </div> | |
| 597 </div> | |
| 598 | |
| 599 <a href="#jump-to-line" rel="facebox[.linejump]" data-hotkey="l" style="display:none">Jump to Line</a> | |
| 600 <div id="jump-to-line" style="display:none"> | |
| 601 <form accept-charset="UTF-8" class="js-jump-to-line-form"> | |
| 602 <input class="linejump-input js-jump-to-line-field" type="text" placeholder="Jump to line…" autofocus> | |
| 603 <button type="submit" class="button">Go</button> | |
| 604 </form> | |
| 605 </div> | |
| 606 | |
| 607 </div> | |
| 608 | |
| 609 </div><!-- /.repo-container --> | |
| 610 <div class="modal-backdrop"></div> | |
| 611 </div><!-- /.container --> | |
| 612 </div><!-- /.site --> | |
| 613 | |
| 614 | |
| 615 </div><!-- /.wrapper --> | |
| 616 | |
| 617 <div class="container"> | |
| 618 <div class="site-footer"> | |
| 619 <ul class="site-footer-links right"> | |
| 620 <li><a href="https://status.github.com/">Status</a></li> | |
| 621 <li><a href="http://developer.github.com">API</a></li> | |
| 622 <li><a href="http://training.github.com">Training</a></li> | |
| 623 <li><a href="http://shop.github.com">Shop</a></li> | |
| 624 <li><a href="/blog">Blog</a></li> | |
| 625 <li><a href="/about">About</a></li> | |
| 626 | |
| 627 </ul> | |
| 628 | |
| 629 <a href="/" aria-label="Homepage"> | |
| 630 <span class="mega-octicon octicon-mark-github" title="GitHub"></span> | |
| 631 </a> | |
| 632 | |
| 633 <ul class="site-footer-links"> | |
| 634 <li>© 2014 <span title="0.04448s from github-fe129-cp1-prd.iad.github.net">GitHub</span>, Inc.</li> | |
| 635 <li><a href="/site/terms">Terms</a></li> | |
| 636 <li><a href="/site/privacy">Privacy</a></li> | |
| 637 <li><a href="/security">Security</a></li> | |
| 638 <li><a href="/contact">Contact</a></li> | |
| 639 </ul> | |
| 640 </div><!-- /.site-footer --> | |
| 641 </div><!-- /.container --> | |
| 642 | |
| 643 | |
| 644 <div class="fullscreen-overlay js-fullscreen-overlay" id="fullscreen_overlay"> | |
| 645 <div class="fullscreen-container js-suggester-container"> | |
| 646 <div class="textarea-wrap"> | |
| 647 <textarea name="fullscreen-contents" id="fullscreen-contents" class="fullscreen-contents js-fullscreen-contents js-suggester-field" placeholder=""></textarea> | |
| 648 </div> | |
| 649 </div> | |
| 650 <div class="fullscreen-sidebar"> | |
| 651 <a href="#" class="exit-fullscreen js-exit-fullscreen tooltipped tooltipped-w" aria-label="Exit Zen Mode"> | |
| 652 <span class="mega-octicon octicon-screen-normal"></span> | |
| 653 </a> | |
| 654 <a href="#" class="theme-switcher js-theme-switcher tooltipped tooltipped-w" | |
| 655 aria-label="Switch themes"> | |
| 656 <span class="octicon octicon-color-mode"></span> | |
| 657 </a> | |
| 658 </div> | |
| 659 </div> | |
| 660 | |
| 661 | |
| 662 | |
| 663 <div id="ajax-error-message" class="flash flash-error"> | |
| 664 <span class="octicon octicon-alert"></span> | |
| 665 <a href="#" class="octicon octicon-x flash-close js-ajax-error-dismiss" aria-label="Dismiss error"></a> | |
| 666 Something went wrong with that request. Please try again. | |
| 667 </div> | |
| 668 | |
| 669 | |
| 670 <script crossorigin="anonymous" src="https://assets-cdn.github.com/assets/frameworks-0c1b00f7935ae85624f5fc5d40d52d60febf92b4.js" type="text/javascript"></script> | |
| 671 <script async="async" crossorigin="anonymous" src="https://assets-cdn.github.com/assets/github-cbba41b870c9e4d89d40771e5c675b37b14e9601.js" type="text/javascript"></script> | |
| 672 | |
| 673 | |
| 674 <script async src="https://www.google-analytics.com/analytics.js"></script> | |
| 675 </body> | |
| 676 </html> | |
| 677 |
