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comparison samtools_rmdup.xml @ 3:d67b176f2dae draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_rmdup commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
author devteam
date Fri, 18 Dec 2015 19:46:01 -0500
parents b1b367792034
children c2549832fb33
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2:b1b367792034 3:d67b176f2dae
1 <tool id="samtools_rmdup" name="RmDup" version="2.0"> 1 <tool id="samtools_rmdup" name="RmDup" version="2.0">
2 <description>remove PCR duplicates</description> 2 <description>remove PCR duplicates</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"></expand> 6 <requirements>
7 <requirement type="package" version="0.1.19">samtools</requirement>
8 </requirements>
7 <expand macro="stdio"></expand> 9 <expand macro="stdio"></expand>
8 <expand macro="version_command"></expand> 10 <expand macro="version_command"></expand>
9 <command>samtools rmdup 11 <command>samtools rmdup
10 #if str( $bam_paired_end_type.bam_paired_end_type_selector ) == "PE" 12 #if str( $bam_paired_end_type.bam_paired_end_type_selector ) == "PE"
11 ${bam_paired_end_type.force_se} 13 ${bam_paired_end_type.force_se}