Mercurial > repos > devteam > samtools_rmdup

comparison samtools_rmdup.xml @ 1:75e4b89f1004 draft

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Uploaded tool and dependency definitions that specify samtools version 0.1.19.
author devteam
date Thu, 27 Mar 2014 14:05:46 -0400
parents 27136ac45e90
children b1b367792034
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0:27136ac45e90 1:75e4b89f1004
1 <tool id="samtools_rmdup" name="rmdup" version="1.0.0"> 1 <tool id="samtools_rmdup" name="rmdup" version="1.0.1">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="0.1.18">samtools</requirement> 3 <requirement type="package" version="0.1.19">samtools</requirement>
4 </requirements> 4 </requirements>
5 <description>remove PCR duplicates</description> 5 <description>remove PCR duplicates</description>
6 <command>samtools rmdup 6 <command>samtools rmdup
7 #if str( $bam_paired_end_type.bam_paired_end_type_selector ) == "PE" 7 #if str( $bam_paired_end_type.bam_paired_end_type_selector ) == "PE"
8 ${bam_paired_end_type.force_se} 8 ${bam_paired_end_type.force_se}